• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

两种掘足纲软体动物的完整线粒体基因组

Complete mitochondrial genomes of two scaphopod molluscs.

作者信息

Kocot Kevin M, Wollesen Tim, Varney Rebecca M, Schwartz Megan L, Steiner Gerhard, Wanninger Andreas

机构信息

Department of Biological Sciences, University of Alabama, Tuscaloosa, AL, USA.

Developmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.

出版信息

Mitochondrial DNA B Resour. 2019 Sep 23;4(2):3161-3162. doi: 10.1080/23802359.2019.1666689.

DOI:10.1080/23802359.2019.1666689
PMID:33365899
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707011/
Abstract

Complete mitochondrial genomes were determined for two scaphopod molluscs: the dentaliid and an unidentified Antarctic gadilid. Both genomes are complete except, in Gadilida sp. indet., a short stretch of nad5 was undetermined and trnR could not be annotated. Organization of the Gadilida sp. genome is nearly identical to that previously reported for the gadilid whereas trnK, nad5, trnD, nad4, and nad4l are transposed to the opposite strand in the previously published genome relative to that of . Phylogenetic analysis of the 13 protein-coding and 2 rRNA genes recovered Scaphopoda, Gadilida, and Dentaliida monophyletic with maximal support.

摘要

测定了两种掘足纲软体动物的完整线粒体基因组

角贝科动物和一种未鉴定的南极掘足纲动物。除了在未鉴定的南极掘足纲动物中,一段短的NAD5未确定且tRNAR无法注释外,两个基因组都是完整的。未鉴定的南极掘足纲动物的基因组组织与先前报道的掘足纲动物几乎相同,而相对于先前发表的基因组,tRNK、NAD5、tRN D、NAD4和NAD4L在相反链上发生了转位。对13个蛋白质编码基因和2个rRNA基因的系统发育分析得到了最大支持,恢复了掘足纲、南极掘足纲和角贝科的单系性。

相似文献

1
Complete mitochondrial genomes of two scaphopod molluscs.两种掘足纲软体动物的完整线粒体基因组
Mitochondrial DNA B Resour. 2019 Sep 23;4(2):3161-3162. doi: 10.1080/23802359.2019.1666689.
2
The Complete Mitochondrial Genome and Gene Arrangement of the Enigmatic Scaphopod .神秘的石蛃目软体动物的完整线粒体基因组和基因排列。
Genes (Basel). 2023 Jan 13;14(1):210. doi: 10.3390/genes14010210.
3
The complete sequence and gene organization of the mitochondrial genome of the gadilid scaphopod Siphonondentalium lobatum (Mollusca).掘足纲贝类宽叶管角贝(软体动物门)线粒体基因组的完整序列及基因组织
Mol Phylogenet Evol. 2004 May;31(2):605-17. doi: 10.1016/j.ympev.2003.08.007.
4
The expression of an engrailed protein during embryonic shell formation of the tusk-shell, Antalis entalis (Mollusca, Scaphopoda).在象牙贝(Antalis entalis,软体动物,掘足纲)胚胎外壳形成过程中一种engrailed蛋白的表达
Evol Dev. 2001 Sep-Oct;3(5):312-21. doi: 10.1046/j.1525-142x.2001.01034.x.
5
Muscle development in Antalis entalis (Mollusca, Scaphopoda) and its significance for scaphopod relationships.安塔利斯(软体动物,掘足纲)的肌肉发育及其对掘足纲亲缘关系的意义。
J Morphol. 2002 Oct;254(1):53-64. doi: 10.1002/jmor.10004.
6
Complete sequences of the highly rearranged molluscan mitochondrial genomes of the Scaphopod Graptacme eborea and the bivalve Mytilus edulis.掘足纲的北方格拉普塔蛤和双壳纲的紫贻贝高度重排的软体动物线粒体基因组的完整序列。
Mol Biol Evol. 2004 Aug;21(8):1492-503. doi: 10.1093/molbev/msh090. Epub 2004 Mar 10.
7
Remnants of ancestral larval eyes in an eyeless mollusk? Molecular characterization of photoreceptors in the scaphopod .一种无眼软体动物中祖先幼虫眼睛的遗迹?掘足纲动物光感受器的分子特征
Evodevo. 2019 Oct 19;10:25. doi: 10.1186/s13227-019-0140-7. eCollection 2019.
8
The mitochondrial genome of Priapulus caudatus Lamarck (Priapulida: Priapulidae).尾鳃蚓(Priapulus caudatus Lamarck,鳃曳动物门:鳃曳虫科)的线粒体基因组。
Gene. 2007 Mar 1;389(1):96-105. doi: 10.1016/j.gene.2006.10.005. Epub 2006 Oct 20.
9
The ParaHox gene Gsx patterns the apical organ and central nervous system but not the foregut in scaphopod and cephalopod mollusks.副同源盒基因Gsx在掘足纲和头足纲软体动物中决定顶器和中枢神经系统的模式,但不决定前肠的模式。
Evodevo. 2015 Dec 29;6:41. doi: 10.1186/s13227-015-0037-z. eCollection 2015.
10
A complete mitochondrial genome from Echinochasmus japonicus supports the elevation of Echinochasminae Odhner, 1910 to family rank (Trematoda: Platyhelminthes).来自日本棘隙吸虫的完整线粒体基因组支持将棘隙亚科(Odhner,1910)提升至科级地位(吸虫纲:扁形动物门)。
Infect Genet Evol. 2016 Nov;45:369-377. doi: 10.1016/j.meegid.2016.09.024. Epub 2016 Oct 1.

引用本文的文献

1
Complementing aculiferan mitogenomics: comparative characterization of mitochondrial genomes of Solenogastres (Mollusca, Aplacophora).补充后鳃类动物的线粒体基因组学研究:腹足纲(软体动物,无板纲)后鳃类动物线粒体基因组的比较特征。
BMC Ecol Evol. 2024 Oct 18;24(1):128. doi: 10.1186/s12862-024-02311-5.
2
Molluscan mitochondrial genomes break the rules.软体动物的线粒体基因组打破了规则。
Philos Trans R Soc Lond B Biol Sci. 2021 May 24;376(1825):20200159. doi: 10.1098/rstb.2020.0159. Epub 2021 Apr 5.

本文引用的文献

1
Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data.Norgal:从全基因组测序数据中提取和从头组装线粒体DNA
BMC Bioinformatics. 2017 Nov 21;18(1):510. doi: 10.1186/s12859-017-1927-y.
2
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
3
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
4
MITOS: improved de novo metazoan mitochondrial genome annotation.MITOS:改进的从头后生动物线粒体基因组注释。
Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
6
Resolving the evolutionary relationships of molluscs with phylogenomic tools.利用系统基因组学工具解决软体动物的进化关系。
Nature. 2011 Oct 26;480(7377):364-7. doi: 10.1038/nature10526.
7
Phylogenomics reveals deep molluscan relationships.系统发生基因组学揭示了软体动物的深层关系。
Nature. 2011 Sep 4;477(7365):452-6. doi: 10.1038/nature10382.
8
The complete sequence and gene organization of the mitochondrial genome of the gadilid scaphopod Siphonondentalium lobatum (Mollusca).掘足纲贝类宽叶管角贝(软体动物门)线粒体基因组的完整序列及基因组织
Mol Phylogenet Evol. 2004 May;31(2):605-17. doi: 10.1016/j.ympev.2003.08.007.
9
Complete sequences of the highly rearranged molluscan mitochondrial genomes of the Scaphopod Graptacme eborea and the bivalve Mytilus edulis.掘足纲的北方格拉普塔蛤和双壳纲的紫贻贝高度重排的软体动物线粒体基因组的完整序列。
Mol Biol Evol. 2004 Aug;21(8):1492-503. doi: 10.1093/molbev/msh090. Epub 2004 Mar 10.
10
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.从多序列比对中选择保守区域用于系统发育分析。
Mol Biol Evol. 2000 Apr;17(4):540-52. doi: 10.1093/oxfordjournals.molbev.a026334.