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Phylogenetic relationship and characterization of the complete chloroplast genome of the alpine leaf-warbler in Qinghai-Tibet Plateau.

作者信息

Liu Zhenhao, Liu Jinlong, Chen Xiangwu, Jin Zhenyu, Luo An, Li Shaobin

机构信息

College of Life Science, Yangtze University, Jingzhou, China.

College of Agriculture, Yangtze University, Jingzhou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 15;4(2):3582-3584. doi: 10.1080/23802359.2019.1677184.

DOI:10.1080/23802359.2019.1677184
PMID:33366095
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707335/
Abstract

The Alpine Leaf-warbler () is a small-sized and poorly-known songbird endemic to China. In this study, we sequenced and described the whole mitochondrial genome of the Alpine leaf-warbler. The entire mitochondrial sequence was determined by long-range PCR and conserved primer walking approaches. The results demonstrated that the whole mitochondrial genome of was 16,879 bp in length with 53.1% A + T content; the genome harboured the same gene order as that of other passerine birds, including 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and non-coding control region. The control region (D-loop) of include two portions that one was located between tRNA-Gln and tRNA-Phe (219 bp in length) and the other is between tRNA-Thr and tRNA- Pro (1087 bp in length), which is similar to other Leaf-warblers. Phylogenetic analysis indicated that the genome of species clustered within a clade and is closer related to Aegithalidae species than Paridae species. These mitochondrial data are potentially important for the further studies on molecular evolution and conservation genetics on leaf warbler species.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aea4/7707335/feb775204f16/TMDN_A_1677184_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aea4/7707335/feb775204f16/TMDN_A_1677184_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aea4/7707335/feb775204f16/TMDN_A_1677184_F0001_B.jpg

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1
Phylogenetic relationship and characterization of the complete chloroplast genome of the alpine leaf-warbler in Qinghai-Tibet Plateau.
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本文引用的文献

1
Complete mitochondrial genome of Pallas's Leaf Warbler ().黄腰柳莺的完整线粒体基因组()。
Mitochondrial DNA B Resour. 2018 Feb 12;3(1):211-212. doi: 10.1080/23802359.2017.1403867.
2
Characterization of complete mitochondrial genome of the Brown Accentor on the Tibet Plateau.
Mitochondrial DNA B Resour. 2017 Jul 26;2(2):435-436. doi: 10.1080/23802359.2017.1357436.
3
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.