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农田蜘蛛的DNA条形码分析

DNA barcoding of spiders from agricultural fields.

作者信息

Tahir Hafiz Muhammad, Summer Muhammad, Mehmood Sana, Ashraf Sehrish, Naseem Sajida

机构信息

Department of Zoology, Government College University Lahore, Lahore, Pakistan.

Department of Zoology, University of Education Lower Mall Campus Lahore, Lahore, Pakistan.

出版信息

Mitochondrial DNA B Resour. 2019 Nov 20;4(2):4144-4151. doi: 10.1080/23802359.2019.1693283.

Abstract

In the present study, DNA barcoding was used to assess the percentage accuracy of morphological base identification of spiders from the agriculture fields of district Layyah, Punjab, Pakistan. A total of 872 spiders were captured from June to August of 2017. All the collected spiders were brought to molecular laboratory at GC University Lahore, preserved in 95% ethanol and stored at -20 °C until the DNA extraction. Spiders were evaluated morphologically on the basis of different identification Keys and Catalogs. Morphological identification revealed the presence of 12 families, 29 genra and 49 species. To evaluate the authenticity of morphological identification, tissue samples of 96 specimens were sent to Canadian Center for Biodiversity and Genomics, University of Guelph, Canada. A 658-base pair sequence of COI (Cytochrome c Oxidase Subunit I) of 90 specimens was retrieved successfully, which confirmed the presence of 11 families, 25 genra and 47 species. On the basis of molecular results, all the misidentified specimens were then allotted the correct taxon. Overall accuracy of morphological based identification was 88%. It is concluded from the present study that morphological investigations to identify a spider, are satisfactory but to enhance the accuracy, pace and credibility of results, molecular technique like DNA barcoding is considerable. Furthermore, to magnify authenticity of evaluation of spiders, integrated barcoding- combination of molecular methods and conventional taxonomy- is compulsory.

摘要

在本研究中,DNA条形码技术被用于评估从巴基斯坦旁遮普省莱雅县农田采集的蜘蛛基于形态学的鉴定准确率。2017年6月至8月期间共捕获了872只蜘蛛。所有采集到的蜘蛛均被带到拉合尔GC大学的分子实验室,保存在95%乙醇中,并在-20°C下储存,直至进行DNA提取。根据不同的鉴定检索表和目录对蜘蛛进行形态学评估。形态学鉴定显示存在12个科、29个属和49个物种。为了评估形态学鉴定的准确性,选取了96个标本的组织样本送往加拿大圭尔夫大学的加拿大生物多样性与基因组学中心。成功获取了90个标本的细胞色素c氧化酶亚基I(COI)的658个碱基对序列,该序列证实存在11个科、25个属和47个物种。根据分子结果,对所有误鉴定的标本重新进行了正确的分类。基于形态学的鉴定总体准确率为88%。本研究得出结论,通过形态学研究来鉴定蜘蛛是可行的,但为了提高结果的准确性、速度和可信度,DNA条形码等分子技术是值得考虑的。此外,为了提高蜘蛛评估的可信度,必须采用综合条形码技术——将分子方法与传统分类学相结合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8658/7707727/1f8f80894c91/TMDN_A_1693283_F0001_B.jpg

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