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绿翅金刚鹦鹉()线粒体基因组全序列的特征分析与系统发育分析

Characterization and phylogenetic analysis of the complete Green-winged macaw () mitogenome.

作者信息

Liu Da-Wei, Pan Yang, He Jian, Zhou Jing, Xie Chun-Ping

机构信息

Nanjing Forest Police College, Nanjing, China.

Forensic Identification Center for Forest Police of the State Forest Bureau, Nanjing, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 16;5(1):650-651. doi: 10.1080/23802359.2019.1711229.

Abstract

In this study, we sequenced and characterized the complete mitochondrial genome of Green-winged macaw () listed on CITES Appendix II. The circular double-stranded genome was 16,991 bp in size and included 22 transfer RNA (tRNA) genes, 13 protein-coding genes (PCGs), two ribosomal RNA genes ( and ), and one non-coding control region (D-loop). Both order and arrangement of genes were identical to those of other animal mitogenomes. The base content was 30.00% A, 14.38% G, 23.27% T, and 32.35% C, with an A + T content of 53.37%. Furthermore, phylogenetic analysis indicated that is closely related to the Blue and yellow macaw ().

摘要

在本研究中,我们对列入《濒危野生动植物种国际贸易公约》附录II的绿翅金刚鹦鹉()的完整线粒体基因组进行了测序和特征分析。该环状双链基因组大小为16,991 bp,包括22个转运RNA(tRNA)基因、13个蛋白质编码基因(PCG)、两个核糖体RNA基因(和)以及一个非编码控制区(D-loop)。基因的顺序和排列与其他动物线粒体基因组相同。碱基含量为A 30.00%、G 14.38%、T 23.27%、C 32.35%,A+T含量为53.37%。此外,系统发育分析表明,与蓝黄金刚鹦鹉()密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3fd/7748460/e63bdf17b015/TMDN_A_1711229_F0001_B.jpg

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