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作为一种来自芦苇和禾本科的中草药,其完整叶绿体基因组的特征分析。

Characterization of the complete chloroplast genome of as a Chinese herb from Phragmites and Poaceae.

作者信息

Wang Huaichong, Chen Xiaoxuan, Cao Tianyi, Ji Qian

机构信息

Department of Pharmacy, Integrated Chinese and Western Medicine Hospital of Zhejiang Province, Hangzhou, Zhejiang, China.

Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 31;5(1):955-956. doi: 10.1080/23802359.2020.1720544.

Abstract

The root of can often be used as the Chinese herb in China. In this paper, the complete chloroplast genome of was studied for more genetic information. The chloroplast genome was 137,561 bp in length as the circular and typical quadripartite structure, which contained a large single-copy region (LSC) of 82,328 bp, a small single-copy region (SSC) of 12,699 bp, and a pair of inverted-repeat regions (IRs) of 21,267 bp. The overall nucleotide composition of chloroplast genome is: 42,300 bp A (30.7%), 42,090 bp T (30.6%), 26,500 bp C (19.3%), 26,671 bp G (19.4%) and the total G + C content of 38.7%. However, 134 genes were found that included 87 protein-coding genes (PCGs), 39 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). The Maximum-Likelihood (ML) method phylogenetic relationship with the reported chloroplast genomes showed that is closely related to and of the family Poaceae.

摘要

在中国,[植物名称]的根常被用作中草药。本文对[植物名称]的完整叶绿体基因组进行了研究,以获取更多遗传信息。叶绿体基因组长度为137,561 bp,呈环状典型四分体结构,包含一个82,328 bp的大单拷贝区域(LSC)、一个12,699 bp的小单拷贝区域(SSC)和一对21,267 bp的反向重复区域(IRs)。叶绿体基因组的总体核苷酸组成为:42,300 bp的A(30.7%)、42,090 bp的T(30.6%)、26,500 bp的C(19.3%)、26,671 bp的G(19.4%),G + C总含量为38.7%。然而,共发现134个基因,包括87个蛋白质编码基因(PCGs)、39个转运RNA(tRNAs)和8个核糖体RNA(rRNAs)。与已报道的叶绿体基因组的最大似然(ML)方法系统发育关系表明,[植物名称]与禾本科的[植物名称]和[植物名称]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d074/7748783/456bf601adaa/TMDN_A_1720544_F0001_B.jpg

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