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一种中国特有物种(菊苣族;菊科)(梵净山莴苣)(Vaniot)N. 基利安的完整线粒体基因组。

The complete mitochondrial genome of a Chinese endemic species, (Vaniot) N. Kilian (Cichorieae; Asteraceae).

作者信息

Fu Shuoming, Chu Ran, Xu Xin, Chen Haoyuan, Shi Yuhua, Zhu Shixin, Wei Zhen

机构信息

School of Life Sciences, Zhengzhou University, Zhengzhou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Feb 11;5(1):1098-1099. doi: 10.1080/23802359.2020.1726220.

DOI:10.1080/23802359.2020.1726220
PMID:33366891
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748815/
Abstract

The first complete mitochondrial genome (mt) of (Vaniot) N. Kilian (Cichorieae; Asteraceae) was sequenced and successfully assembled in this study. The full length of the mt genome is 360,751 bp, containing 73 genes (33 protein-coding genes, 29 tRNA genes, 6 rRNA genes, and 5 protein-coding genes containing internal stop codons). There are two pairs of long (over 1000 bp) repeat regions in the mt genome of . . The phylogenetic analysis indicated that has a close relationship with other Lactucinae species.

摘要

在本研究中,对(梵净山)少花紫菊(菊苣族;菊科)的首个完整线粒体基因组(mt)进行了测序并成功组装。该mt基因组全长360,751 bp,包含73个基因(33个蛋白质编码基因、29个tRNA基因、6个rRNA基因以及5个含有内部终止密码子的蛋白质编码基因)。少花紫菊的mt基因组中有两对长(超过1000 bp)重复区域。系统发育分析表明,少花紫菊与其他莴苣亚族物种关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2bd8/7748815/25827735a106/TMDN_A_1726220_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2bd8/7748815/25827735a106/TMDN_A_1726220_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2bd8/7748815/25827735a106/TMDN_A_1726220_F0001_B.jpg

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本文引用的文献

1
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
2
Informed and automated k-mer size selection for genome assembly.基于信息和自动化的基因组组装的 k-mer 大小选择。
Bioinformatics. 2014 Jan 1;30(1):31-7. doi: 10.1093/bioinformatics/btt310. Epub 2013 Jun 3.