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从埃塞俄比亚退化土壤中分离出的根际细菌的遗传和代谢多样性。

Genetic and metabolic diversities of rhizobacteria isolated from degraded soil of Ethiopia.

作者信息

Getahun Alemayehu, Kiros Solomon, Muleta Diriba, Assefa Fassil

机构信息

College of Natural Sciences, Addis Ababa University, Ethiopia.

AddisAbaba Institute of Technology, Addis Ababa University, Ethiopia.

出版信息

Heliyon. 2020 Dec 14;6(12):e05697. doi: 10.1016/j.heliyon.2020.e05697. eCollection 2020 Dec.

Abstract

Genetic and metabolic diversities of rhizobacteria are the fundamental sources for their adaptation to cope with abiotic and biotic stresses in order to enhance growth and health of plants in the soil. Thus, this study was initiated to assess the genetic and metabolic diversities of rhizobacteria isolated from plants grown in degraded soil through BOX-PCR and partial sequencing of 16S rRNA genes. A total of eighty isolates were recovered and subjected to phenotypic profiling of carbohydrate and amino acid utilization, BOX PCR and 16S rRNA profiling. The phenotypic profiling showed remarkable metabolic versatility with spp, spp and spp, and BOX-PCR showed greater discriminatory power for fingerprinting of rhizobacterial isolates with high degree of polymorphism. spp showed the highest Simpson's diversity Index. The 16S rRNA genes sequence assigned the rhizobacteria to phyla Proteobacteria with Gammaproteobacteria and Alphaproteobacteria classes and Firmicutes with Bacilli class. The data also showed that the most dominant species were and . Genetic and metabolic diversities of the rhizobacterial isolates reveal the potential of these microbes for plant growth improvement under water deficient soil after testing other inoculant traits.

摘要

根际细菌的遗传和代谢多样性是其适应非生物和生物胁迫以促进土壤中植物生长和健康的基本来源。因此,本研究旨在通过BOX-PCR和16S rRNA基因部分测序来评估从退化土壤中生长的植物分离出的根际细菌的遗传和代谢多样性。总共回收了80株分离物,并对其进行碳水化合物和氨基酸利用的表型分析、BOX-PCR和16S rRNA分析。表型分析显示出与 spp、 spp和 spp显著的代谢多样性,并且BOX-PCR对具有高度多态性的根际细菌分离物指纹识别具有更大的鉴别力。 spp显示出最高的辛普森多样性指数。16S rRNA基因序列将根际细菌归为变形菌门的γ-变形菌纲和α-变形菌纲以及厚壁菌门的芽孢杆菌纲。数据还表明,最主要的物种是 和 。在测试了其他接种特性后,根际细菌分离物的遗传和代谢多样性揭示了这些微生物在缺水土壤中改善植物生长的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f26a/7749386/d00b0b250110/gr1.jpg

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