Suppr超能文献

软木橡树基因组数据库门户(CorkOakDB)。

CorkOakDB-The Cork Oak Genome Database Portal.

机构信息

Instituto Gulbenkian de Ciência, Rua da Quinta Grande, Oeiras 2780-156, Lisboa, Portugal.

Department of Biological and Medical Sciences, Oxford Brookes University, Headington Campus, Oxford OX3 0BP, UK.

出版信息

Database (Oxford). 2020 Dec 31;2020. doi: 10.1093/database/baaa114.

Abstract

Quercus suber (cork oak) is an evergreen tree native to the Mediterranean basin, which plays a key role in the ecology and economy of this area. Over the last decades, this species has gone through an observable decline, mostly due to environmental factors. Deciphering the mechanisms of cork oak's response to the environment and getting a deep insight into its biology are crucial to counteract biotic and abiotic stresses compromising the stability of a unique ecosystem. In the light of these setbacks, the publication of the genome in 2018 was a major step towards understanding the genetic make-up of this species. In an effort to integrate this information in a comprehensive, accessible and intuitive format, we have developed The Cork Oak Genome Database Portal (CorkOakDB). The CorkOakDB is supported by the BioData.pt e-infrastructure, the Portuguese ELIXIR node for biological data. The portal gives public access to search and explore the curated genomic and transcriptomic data on this species. Moreover, CorkOakDB provides a user-friendly interface and functional tools to help the research community take advantage of the increased accessibility to genomic information. A study case is provided to highlight the functionalities of the portal. CorkOakDB guarantees the update, curation and data collection, aiming to collect data besides the genetic/genomic information, in order to become the main repository in cork oak research. Database URL: http://corkoakdb.org/.

摘要

栓皮栎(软木橡树)是一种原产于地中海盆地的常绿乔木,在该地区的生态和经济中起着关键作用。在过去的几十年里,由于环境因素,该物种经历了明显的衰退。破译栓皮栎对环境的反应机制,并深入了解其生物学特性,对于应对生物和非生物胁迫,维护独特生态系统的稳定性至关重要。鉴于这些挫折,2018 年公布的基因组是深入了解该物种遗传构成的重要一步。为了以综合、可访问和直观的格式整合这些信息,我们开发了栓皮栎基因组数据库门户(CorkOakDB)。CorkOakDB 得到了 BioData.pt 生物数据基础设施的支持,该基础设施是葡萄牙的 ELIXIR 生物数据节点。该门户为公众提供了搜索和探索该物种经过策展的基因组和转录组数据的途径。此外,CorkOakDB 提供了一个用户友好的界面和功能工具,帮助研究社区利用基因组信息的可访问性的提高。提供了一个研究案例来突出门户的功能。CorkOakDB 保证更新、策展和数据收集,旨在收集除遗传/基因组信息之外的数据,以便成为栓皮栎研究的主要存储库。数据库网址:http://corkoakdb.org/。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54ff/7774466/790b2e277b45/baaa114f1.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验