Liu Bin, Zhao Shuo, Li Pengli, Yin Yilu, Niu Qingliang, Yan Jinqiang, Huang Danfeng
School of Agriculture and Biology, Shanghai Jiao Tong University, Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, Dongchuan Road, Shanghai, 200240, China.
Department of Plant Genomics, Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra, 08193, Spain.
Hortic Res. 2021 Jan 1;8(1):2. doi: 10.1038/s41438-020-00430-w.
In plants, alternative splicing (AS) is markedly induced in response to environmental stresses, but it is unclear why plants generate multiple transcripts under stress conditions. In this study, RNA-seq was performed to identify AS events in cucumber seedlings grown under different light intensities. We identified a novel transcript of the gibberellin (GA)-deactivating enzyme Gibberellin 2-beta-dioxygenase 8 (CsGA2ox8). Compared with canonical CsGA2ox8.1, the CsGA2ox8.2 isoform presented intron retention between the second and third exons. Functional analysis proved that the transcript of CsGA2ox8.1 but not CsGA2ox8.2 played a role in the deactivation of bioactive GAs. Moreover, expression analysis demonstrated that both transcripts were upregulated by increased light intensity, but the expression level of CsGA2ox8.1 increased slowly when the light intensity was >400 µmol·m·s PPFD (photosynthetic photon flux density), while the CsGA2ox8.2 transcript levels increased rapidly when the light intensity was >200 µmol·m·s PPFD. Our findings provide evidence that plants might finely tune their GA levels by buffering against the normal transcripts of CsGA2ox8 through AS.
在植物中,可变剪接(AS)在响应环境胁迫时会显著诱导,但尚不清楚植物为何在胁迫条件下产生多种转录本。在本研究中,进行了RNA测序以鉴定在不同光照强度下生长的黄瓜幼苗中的AS事件。我们鉴定出一种赤霉素(GA)失活酶赤霉素2-β-双加氧酶8(CsGA2ox8)的新转录本。与典型的CsGA2ox8.1相比,CsGA2ox8.2异构体在第二和第三外显子之间存在内含子保留。功能分析证明,CsGA2ox8.1的转录本而非CsGA2ox8.2的转录本在生物活性GA的失活中起作用。此外,表达分析表明,两种转录本均随着光照强度的增加而上调,但当光照强度>400 µmol·m·s光合光子通量密度(PPFD)时,CsGA2ox8.1的表达水平缓慢增加,而当光照强度>200 µmol·m·s PPFD时,CsGA2ox8.2的转录本水平迅速增加。我们的研究结果提供了证据,表明植物可能通过可变剪接缓冲CsGA2ox8的正常转录本来精细调节其GA水平。