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通过综合分析和实时定量 PCR 鉴定 - 相关基因作为神经母细胞瘤预后模型的潜在生物标志物。

Identification of -Related Gene as a Potential Biomarker for Neuroblastoma Prognostic Model by Integrated Analysis and Quantitative Real-Time PCR.

机构信息

Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Department of Pediatric Surgical Oncology, National Clinical Research Center for Child Health and Disorders, China International Science and Technology Cooperation Base of Child Development and Critical Disorders, Children's Hospital of Chongqing Medical University, Chongqing, P.R. China.

出版信息

DNA Cell Biol. 2021 Feb;40(2):332-347. doi: 10.1089/dna.2020.6193. Epub 2020 Dec 30.

Abstract

Neuroblastoma (NB) has the highest incidence of all extracranial solid tumors in children and is highly lethal. This study aims to establish a prognostic model of NB with -related genes. We determined the gene expression profiles of 900 NB samples from the UCSC database and four Gene Expression Omnibus (GEO) data sets, and performed a comprehensive bioinformatics analysis and clinical sample verification. After univariate Cox regression, least absolute shrinkage and selection operator (Lasso), and multivariate Cox regression analyses, four (, , , and ) genes were finally selected and used to construct a risk score prognostic model. In the UCSC data set, the high-risk group exhibited a significantly worse prognosis than the low-risk group. In addition, the nomogram, which includes prognostic markers and clinical factors, demonstrates high prognostic value. Finally, the differential expression of the four genes in the model was verified by quantitative real-time PCR in clinical tissues. These findings of -related genes provide a new and reliable prognostic model for NB related to .

摘要

神经母细胞瘤(NB)是儿童期所有颅外实体瘤中发病率最高的,且具有高度致命性。本研究旨在建立一个与 - 相关基因的 NB 预后模型。我们从 UCSC 数据库和四个基因表达综合(GEO)数据集确定了 900 个 NB 样本的基因表达谱,并进行了全面的生物信息学分析和临床样本验证。经过单变量 Cox 回归、最小绝对值收缩和选择算子(Lasso)以及多变量 Cox 回归分析,最终选择了四个基因(、、、和)构建风险评分预后模型。在 UCSC 数据集中,高危组的预后明显比低危组差。此外,包含预后标志物和临床因素的列线图显示出了较高的预后价值。最后,通过定量实时 PCR 在临床组织中验证了模型中四个基因的差异表达。这些 - 相关基因的发现为 NB 提供了一个新的、可靠的与相关的预后模型。

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