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从头分子动力学模拟有机磷酸盐与针铁矿的相互作用。

Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite.

机构信息

Institute of Physics, University of Rostock, Albert-Einstein-Str. 23-24, D-18059 Rostock, Germany.

Department of Life, Light, and Matter (LLM), University of Rostock, Albert-Einstein-Str. 25, D-18059 Rostock, Germany.

出版信息

Molecules. 2020 Dec 31;26(1):160. doi: 10.3390/molecules26010160.

DOI:10.3390/molecules26010160
PMID:33396506
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7795625/
Abstract

Today's fertilizers rely heavily on mining phosphorus (P) rocks. These rocks are known to become exhausted in near future, and therefore effective P use is crucial to avoid food shortage. A substantial amount of P from fertilizers gets adsorbed onto soil minerals to become unavailable to plants. Understanding P interaction with these minerals would help efforts that improve P efficiency. To this end, we performed a molecular level analysis of the interaction of common organic P compounds (glycerolphosphate (GP) and inositol hexaphosphate (IHP)) with the abundant soil mineral (goethite) in presence of water. Molecular dynamics simulations are performed for goethite-IHP/GP-water complexes using the multiscale quantum mechanics/molecular mechanics method. Results show that GP forms monodentate () and bidentate mononuclear () motifs with being more stable than . IHP interacts through multiple phosphate groups with the motif being most stable. The order of goethite-IHP/GP interaction energies is GP < GP < IHP < IHP . Water is important in these interactions as multiple proton transfers occur and hydrogen bonds are formed between goethite-IHP/GP complexes and water. We also present theoretically calculated infrared spectra which match reasonably well with frequencies reported in literature.

摘要

今天的肥料严重依赖于开采磷 (P) 矿石。这些磷矿资源在不久的将来可能会枯竭,因此有效利用磷对于避免粮食短缺至关重要。大量来自肥料的磷被土壤矿物质吸附,从而无法被植物利用。了解磷与这些矿物质的相互作用将有助于提高磷效率的努力。为此,我们在水存在的情况下,采用多尺度量子力学/分子力学方法,对常见的有机磷化合物(甘油磷酸 (GP) 和肌醇六磷酸 (IHP))与丰富的土壤矿物(针铁矿)之间的相互作用进行了分子水平分析。结果表明,GP 与针铁矿形成单齿配位 () 和双齿单核 () 结构,其中 比 更稳定。IHP 通过多个磷酸基团与 结构相互作用,其中 结构最稳定。针铁矿-IHP/GP 相互作用能的顺序为 GP < GP < IHP < IHP 。水在这些相互作用中很重要,因为会发生多次质子转移,并且针铁矿-IHP/GP 复合物与水之间形成氢键。我们还提出了理论计算的红外光谱,与文献中报道的频率相当吻合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/5a4c5b880052/molecules-26-00160-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/116a24ac365c/molecules-26-00160-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/1bae72106334/molecules-26-00160-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/37ef31ec406c/molecules-26-00160-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/094c7b3475b0/molecules-26-00160-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/5a4c5b880052/molecules-26-00160-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/116a24ac365c/molecules-26-00160-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/1bae72106334/molecules-26-00160-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/37ef31ec406c/molecules-26-00160-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/094c7b3475b0/molecules-26-00160-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ab0/7795625/5a4c5b880052/molecules-26-00160-g005.jpg

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本文引用的文献

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CP2K: An electronic structure and molecular dynamics software package - Quickstep: Efficient and accurate electronic structure calculations.CP2K:一个电子结构与分子动力学软件包 - Quickstep:高效且精确的电子结构计算
J Chem Phys. 2020 May 21;152(19):194103. doi: 10.1063/5.0007045.
2
Molecular level picture of the interplay between pH and phosphate binding at the goethite-water interface.针铁矿-水界面处pH值与磷酸盐结合之间相互作用的分子水平图景。
Phys Chem Chem Phys. 2020 Nov 25;22(45):26509-26524. doi: 10.1039/d0cp04698a.
3
Molecular Basis of Water Activity in Glycerol-Water Mixtures.
甘油-水混合物中水活性的分子基础
Front Chem. 2019 Nov 1;7:731. doi: 10.3389/fchem.2019.00731. eCollection 2019.
4
Towards resolving the phosphorus chaos created by food systems.致力于解决食品系统造成的磷混乱问题。
Ambio. 2020 May;49(5):1076-1089. doi: 10.1007/s13280-019-01255-1. Epub 2019 Sep 21.
5
QM/MM simulations of organic phosphorus adsorption at the diaspore-water interface.QM/MM 模拟水合氧化铝表面有机磷的吸附
Phys Chem Chem Phys. 2019 Nov 13;21(44):24316-24325. doi: 10.1039/c9cp04032c.
6
New Training to Meet the Global Phosphorus Challenge.应对全球磷挑战的新培训
Environ Sci Technol. 2019 Aug 6;53(15):8479-8481. doi: 10.1021/acs.est.9b03519. Epub 2019 Jul 8.
7
Influence of metal ions on glyphosate detection by FMOC-Cl.金属离子对 FMOC-Cl 检测草甘膦的影响。
Environ Monit Assess. 2019 Mar 26;191(4):244. doi: 10.1007/s10661-019-7387-2.
8
Infrared spectroscopic characterization of phosphate binding at the goethite-water interface.红外光谱法研究针铁矿-水界面上的磷酸盐结合
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An Efficient Lossless Compression Algorithm for Trajectories of Atom Positions and Volumetric Data.一种高效的原子位置轨迹和体积数据无损压缩算法。
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J Environ Sci (China). 2018 Aug;70:175-189. doi: 10.1016/j.jes.2017.12.001. Epub 2017 Dec 12.