动态转录组 mC 及其在 RNA 加工中的调控作用。
Dynamic transcriptomic m C and its regulatory role in RNA processing.
机构信息
Key Laboratory of Genomic and Precision Medicine, Collaborative Innovation Center of Genetics and Development, College of Future Technology, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
China National Center For Bioinformation, Beijing, China.
出版信息
Wiley Interdiscip Rev RNA. 2021 Jul;12(4):e1639. doi: 10.1002/wrna.1639. Epub 2021 Jan 13.
RNA 5-methylcytosine (m C) is a prevalent RNA modification in multiple RNA species, including messenger RNAs (mRNAs), transfer RNAs (tRNAs), ribosomal RNAs (rRNAs), and noncoding RNAs (ncRNAs), and broadly distributed from archaea, prokaryotes to eukaryotes. The multiple detecting techniques of m C have been developed, such as m C-RIP-seq, miCLIP-seq, AZA-IP-seq, RNA-BisSeq, TAWO-seq, and Nanopore sequencing. These high-throughput techniques, combined with corresponding analysis pipeline, provide a precise m C landscape contributing to the deciphering of its biological functions. The m C modification is distributed along with mRNA and enriched around 5'UTR and 3'UTR, and conserved in tRNAs and rRNAs. It is dynamically regulated by its related enzymes, including methyltransferases (NSUN, DNMT, and TRDMT family members), demethylases (TET families and ALKBH1), and binding proteins (ALYREF and YBX1). So far, accumulative studies have revealed that m C participates in a variety of RNA metabolism, including mRNA export, RNA stability, and translation. Depletion of m C modification in the organism could cause dysfunction of mitochondria, drawback of stress response, frustration of gametogenesis and embryogenesis, abnormality of neuro and brain development, and has been implicated in cell migration and tumorigenesis. In this review, we provide a comprehensive summary of dynamic regulatory elements of RNA m C, including methyltransferases (writers), demethylases (erasers), and binding proteins (readers). We also summarized the related detecting technologies and biological functions of the RNA 5-methylcytosine, and provided future perspectives in m C research. This article is categorized under: RNA Processing > RNA Editing and Modification.
RNA 5-甲基胞嘧啶(mC)是一种普遍存在于多种 RNA 中的 RNA 修饰物,包括信使 RNA(mRNA)、转移 RNA(tRNA)、核糖体 RNA(rRNA)和非编码 RNA(ncRNA),并广泛存在于古菌、原核生物到真核生物中。已经开发出多种 mC 检测技术,如 mC-RIP-seq、miCLIP-seq、AZA-IP-seq、RNA-BisSeq、TAWO-seq 和纳米孔测序。这些高通量技术与相应的分析流程相结合,提供了精确的 mC 图谱,有助于解析其生物学功能。mC 修饰物分布在 mRNA 上,在 5'UTR 和 3'UTR 附近富集,并在 tRNA 和 rRNA 中保守。它的动态调节由其相关酶完成,包括甲基转移酶(NSUN、DNMT 和 TRDMT 家族成员)、去甲基酶(TET 家族和 ALKBH1)和结合蛋白(ALYREF 和 YBX1)。到目前为止,累积的研究表明 mC 参与了多种 RNA 代谢,包括 mRNA 输出、RNA 稳定性和翻译。在生物体中耗尽 mC 修饰会导致线粒体功能障碍、应激反应受阻、配子发生和胚胎发生受阻、神经和大脑发育异常,并与细胞迁移和肿瘤发生有关。在这篇综述中,我们全面总结了 RNA mC 的动态调控元件,包括甲基转移酶(写作者)、去甲基酶(擦除者)和结合蛋白(读者)。我们还总结了 RNA 5-甲基胞嘧啶的相关检测技术和生物学功能,并对 mC 研究的未来前景进行了展望。本文属于以下分类:RNA 加工 > RNA 编辑与修饰。