• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一类广义的强稳定且无维度的T-RPMD积分器。

A generalized class of strongly stable and dimension-free T-RPMD integrators.

作者信息

Rosa-Raíces Jorge L, Sun Jiace, Bou-Rabee Nawaf, Miller Thomas F

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.

Department of Mathematical Sciences, Rutgers University Camden, Camden, New Jersey 08102, USA.

出版信息

J Chem Phys. 2021 Jan 14;154(2):024106. doi: 10.1063/5.0036954.

DOI:10.1063/5.0036954
PMID:33445902
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7796824/
Abstract

Recent work shows that strong stability and dimensionality freedom are essential for robust numerical integration of thermostatted ring-polymer molecular dynamics (T-RPMD) and path-integral molecular dynamics, without which standard integrators exhibit non-ergodicity and other pathologies [R. Korol et al., J. Chem. Phys. 151, 124103 (2019) and R. Korol et al., J. Chem. Phys. 152, 104102 (2020)]. In particular, the BCOCB scheme, obtained via Cayley modification of the standard BAOAB scheme, features a simple reparametrization of the free ring-polymer sub-step that confers strong stability and dimensionality freedom and has been shown to yield excellent numerical accuracy in condensed-phase systems with large time steps. Here, we introduce a broader class of T-RPMD numerical integrators that exhibit strong stability and dimensionality freedom, irrespective of the Ornstein-Uhlenbeck friction schedule. In addition to considering equilibrium accuracy and time step stability as in previous work, we evaluate the integrators on the basis of their rates of convergence to equilibrium and their efficiency at evaluating equilibrium expectation values. Within the generalized class, we find BCOCB to be superior with respect to accuracy and efficiency for various configuration-dependent observables, although other integrators within the generalized class perform better for velocity-dependent quantities. Extensive numerical evidence indicates that the stated performance guarantees hold for the strongly anharmonic case of liquid water. Both analytical and numerical results indicate that BCOCB excels over other known integrators in terms of accuracy, efficiency, and stability with respect to time step for practical applications.

摘要

近期的研究表明,对于恒温环聚合物分子动力学(T-RPMD)和路径积分分子动力学的稳健数值积分而言,强大的稳定性和维度自由度至关重要,否则标准积分器会表现出非遍历性及其他病态问题[R. Korol等人,《化学物理杂志》151, 124103 (2019)以及R. Korol等人,《化学物理杂志》152, 104102 (2020)]。具体而言,通过对标准BAOAB方案进行凯莱修正得到的BCOCB方案,其特点是对自由环聚合物子步进行简单的重新参数化,从而赋予了强大的稳定性和维度自由度,并且在具有大时间步长的凝聚相系统中已被证明能产生出色的数值精度。在此,我们引入了一类更广泛的T-RPMD数值积分器,它们具有强大的稳定性和维度自由度,与奥恩斯坦-乌伦贝克摩擦时间表无关。除了像之前的工作那样考虑平衡精度和时间步长稳定性外,我们还根据积分器向平衡收敛的速率以及它们在评估平衡期望值时的效率来评估这些积分器。在这个广义类中,我们发现对于各种与构型相关的可观测量,BCOCB在精度和效率方面表现更优,尽管广义类中的其他积分器对于与速度相关的量表现更好。大量的数值证据表明,对于液态水的强非谐情况,所述的性能保证是成立的。分析和数值结果均表明,在实际应用中,就精度、效率和时间步长稳定性而言,BCOCB优于其他已知的积分器。

相似文献

1
A generalized class of strongly stable and dimension-free T-RPMD integrators.一类广义的强稳定且无维度的T-RPMD积分器。
J Chem Phys. 2021 Jan 14;154(2):024106. doi: 10.1063/5.0036954.
2
Dimension-free path-integral molecular dynamics without preconditioning.无预处理的无量纲路径积分分子动力学
J Chem Phys. 2020 Mar 14;152(10):104102. doi: 10.1063/1.5134810.
3
Cayley modification for strongly stable path-integral and ring-polymer molecular dynamics.凯莱修正的强稳定路径积分和环聚合物分子动力学。
J Chem Phys. 2019 Sep 28;151(12):124103. doi: 10.1063/1.5120282.
4
Reactions dynamics for X + H2 insertion reactions (X = C(1D), N(2D), O(1D), S(1D)) with Cayley propagator ring-polymer molecular dynamics.采用凯莱传播子环聚合物分子动力学方法研究X + H₂插入反应(X = C(¹D)、N(²D)、O(¹D)、S(¹D))的反应动力学。
J Chem Phys. 2024 Jun 21;160(23). doi: 10.1063/5.0209143.
5
Non-equilibrium dynamics from RPMD and CMD.环面分子动力学(RPMD)和经典分子动力学(CMD)的非平衡动力学
J Chem Phys. 2016 Nov 28;145(20):204118. doi: 10.1063/1.4967958.
6
Two-dimensional Raman spectroscopy of Lennard-Jones liquids via ring-polymer molecular dynamics.通过环聚合物分子动力学对 Lennard-Jones 液体进行二维拉曼光谱分析。
J Chem Phys. 2020 Jul 21;153(3):034117. doi: 10.1063/5.0015436.
7
How to remove the spurious resonances from ring polymer molecular dynamics.如何从环聚合物分子动力学中去除虚假共振。
J Chem Phys. 2014 Jun 21;140(23):234116. doi: 10.1063/1.4883861.
8
A comparative study of the centroid and ring-polymer molecular dynamics methods for approximating quantum time correlation functions from path integrals.用于从路径积分近似量子时间关联函数的质心和环聚合物分子动力学方法的比较研究。
J Chem Phys. 2009 May 14;130(18):184105. doi: 10.1063/1.3126950.
9
Adaptive time stepping in biomolecular dynamics.生物分子动力学中的自适应时间步长
J Chem Phys. 2005 Sep 22;123(12):124909. doi: 10.1063/1.1997137.
10
On the short-time limit of ring polymer molecular dynamics.关于环形聚合物分子动力学的短时极限
J Chem Phys. 2006 Sep 28;125(12):124105. doi: 10.1063/1.2357599.

引用本文的文献

1
Nuclear Quantum Effects in the Ionic Dissociation Dynamics of HCl on the Water Ice Cluster.水冰团簇上HCl离子解离动力学中的核量子效应
Molecules. 2025 Jan 21;30(3):442. doi: 10.3390/molecules30030442.

本文引用的文献

1
Dimension-free path-integral molecular dynamics without preconditioning.无预处理的无量纲路径积分分子动力学
J Chem Phys. 2020 Mar 14;152(10):104102. doi: 10.1063/1.5134810.
2
Cayley modification for strongly stable path-integral and ring-polymer molecular dynamics.凯莱修正的强稳定路径积分和环聚合物分子动力学。
J Chem Phys. 2019 Sep 28;151(12):124103. doi: 10.1063/1.5120282.
3
Ab initio thermodynamics of liquid and solid water.水的液相和固相的从头热力学。
Proc Natl Acad Sci U S A. 2019 Jan 22;116(4):1110-1115. doi: 10.1073/pnas.1815117116. Epub 2019 Jan 4.
4
Fine tuning classical and quantum molecular dynamics using a generalized Langevin equation.使用广义朗之万方程对经典和量子分子动力学进行精细调整。
J Chem Phys. 2018 Mar 14;148(10):102301. doi: 10.1063/1.4990536.
5
An open-chain imaginary-time path-integral sampling approach to the calculation of approximate symmetrized quantum time correlation functions.一种开链虚时间路径积分抽样方法,用于计算近似对称量子时间相关函数。
J Chem Phys. 2018 Mar 14;148(10):102340. doi: 10.1063/1.5005543.
6
A unified thermostat scheme for efficient configurational sampling for classical/quantum canonical ensembles via molecular dynamics.一种通过分子动力学对经典/量子正则系综进行高效构型采样的统一恒温器方案。
J Chem Phys. 2017 Jul 21;147(3):034109. doi: 10.1063/1.4991621.
7
A simple and accurate algorithm for path integral molecular dynamics with the Langevin thermostat.一种用于朗之万恒温器的路径积分分子动力学的简单且精确的算法。
J Chem Phys. 2016 Jul 14;145(2):024103. doi: 10.1063/1.4954990.
8
Communication: Relation of centroid molecular dynamics and ring-polymer molecular dynamics to exact quantum dynamics.通讯:质心分子动力学和环聚合物分子动力学与精确量子动力学的关系。
J Chem Phys. 2015 May 21;142(19):191101. doi: 10.1063/1.4921234.
9
Boltzmann-conserving classical dynamics in quantum time-correlation functions: "Matsubara dynamics".量子时间关联函数中守恒玻尔兹曼的经典动力学:“松原动力学”
J Chem Phys. 2015 Apr 7;142(13):134103. doi: 10.1063/1.4916311.
10
How to remove the spurious resonances from ring polymer molecular dynamics.如何从环聚合物分子动力学中去除虚假共振。
J Chem Phys. 2014 Jun 21;140(23):234116. doi: 10.1063/1.4883861.