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(兰科)的完整叶绿体基因组序列。

The complete chloroplast genome sequence of (Orchidaceae).

作者信息

Liu Jiang-Feng

机构信息

Management Office of Yushan Scenic Park, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2020 May 14;5(3):2058-2059. doi: 10.1080/23802359.2020.1763866.

Abstract

is an epiphytic orchid distributed in tropical and subtropical regions of Asia, and has been listed as an endangered species in the Wildlife Conservation List. In this study, the complete chloroplast genome of was assembled using Illumina sequencing data. The complete chloroplast (cp) genome is 158,325 bp in length, including a pair of invert repeats (IRA and IRB) regions of 26,700 bp, large single-copy (LSC) region of 86,584 bp, and small single-copy (SSC) region of 18,341 bp. The chloroplast genome contains 133 genes, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that was closely related to based on 17chloroplast genomes matrix of Orchidaceae.

摘要

是一种附生兰花,分布于亚洲热带和亚热带地区,已被列入《野生动物保护名录》中的濒危物种。在本研究中,利用Illumina测序数据组装了该物种的完整叶绿体基因组。完整的叶绿体(cp)基因组长度为158,325 bp,包括一对26,700 bp的反向重复序列(IRA和IRB)区域、86,584 bp的大单拷贝(LSC)区域和18,341 bp的小单拷贝(SSC)区域。叶绿体基因组包含133个基因,包括83个蛋白质编码基因、38个tRNA基因和8个rRNA基因。系统发育分析表明,基于兰科17个叶绿体基因组矩阵,该物种与某物种密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea8d/7782275/24a07117ecf3/TMDN_A_1763866_F0001_B.jpg

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本文引用的文献

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Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.

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