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冬季种植植物(桑科)的质体基因组。

The plastid genome of winter cropping plants (Moraceae).

作者信息

Chen Huanhuan, Liu Qing, Tang Lizhou

机构信息

College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, PR China.

Key Laboratory of Yunnan Province Universities of the Diversity and Ecological Adaptive Evolution for Animals and Plants on YunGui Plateau, Qujing Normal University, Qujing, PR China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 9;5(3):2703-2704. doi: 10.1080/23802359.2020.1787270.

DOI:10.1080/23802359.2020.1787270
PMID:33457912
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782934/
Abstract

subsp. (Blume) Corner is a hemiepiphytic dioecious fig species of the genus in the family Moraceae. To better determine its phylogenetic location with respect to the other species, the complete plastid genome of was sequenced. The whole plastome is 160,342 bp in length, consisting of a pair of inverted repeat (IR) regions of 25,859 bp, one large single-copy (LSC) region of 88,526 bp, and one small single-copy (SSC) region of 20,098 bp. The overall GC content of the whole plastome is 35.9%. Further, maximum likelihood (ML) phylogenetic analyze was conducted using 23 complete fig plastomes, which support close relationships among , , , and .

摘要

亚种(布卢姆)科纳是桑科榕属的一种半附生雌雄异株的无花果物种。为了更好地确定其相对于其他榕属物种的系统发育位置,对该物种的完整质体基因组进行了测序。整个质体基因组长度为160,342 bp,由一对25,859 bp的反向重复(IR)区域、一个88,526 bp的大单拷贝(LSC)区域和一个20,098 bp的小单拷贝(SSC)区域组成。整个质体基因组的总体GC含量为35.9%。此外,使用23个完整的无花果质体基因组进行了最大似然(ML)系统发育分析,结果支持该物种与其他几种榕属物种之间的密切关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1ea/7782934/fa6128428bdc/TMDN_A_1787270_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1ea/7782934/fa6128428bdc/TMDN_A_1787270_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1ea/7782934/fa6128428bdc/TMDN_A_1787270_F0001_C.jpg

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本文引用的文献

1
First plastid phylogenomic study reveals potential cyto-nuclear discordance in the evolutionary history of Ficus L. (Moraceae).首次质体系统基因组学研究揭示了榕属(桑科)进化历史中潜在的细胞核与细胞质不一致性。
Mol Phylogenet Evol. 2017 Apr;109:93-104. doi: 10.1016/j.ympev.2016.12.031. Epub 2016 Dec 29.
2
Winter cropping in Ficus tinctoria: an alternative strategy.榕树的冬季种植:一种替代策略。
Sci Rep. 2015 Nov 12;5:16496. doi: 10.1038/srep16496.
3
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
IQ-TREE:一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.