Gordin Miri, Philip Hagit, Zilberberg Alona, Gidoni Moriah, Margalit Raanan, Clouser Christopher, Adams Kristofor, Vigneault Francois, Cohen Irun R, Yaari Gur, Efroni Sol
The Mina & Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat-Gan, Israel.
Faculty of Engineering, Bar Ilan University, Ramat Gan, Israel.
PLoS Comput Biol. 2021 Jan 19;17(1):e1008486. doi: 10.1371/journal.pcbi.1008486. eCollection 2021 Jan.
The partial success of tumor immunotherapy induced by checkpoint blockade, which is not antigen-specific, suggests that the immune system of some patients contain antigen receptors able to specifically identify tumor cells. Here we focused on T-cell receptor (TCR) repertoires associated with spontaneous breast cancer. We studied the alpha and beta chain CDR3 domains of TCR repertoires of CD4 T cells using deep sequencing of cell populations in mice and applied the results to published TCR sequence data obtained from human patients. We screened peripheral blood T cells obtained monthly from individual mice spontaneously developing breast tumors by 5 months. We then looked at identical TCR sequences in published human studies; we used TCGA data from tumors and healthy tissues of 1,256 breast cancer resections and from 4 focused studies including sequences from tumors, lymph nodes, blood and healthy tissues, and from single cell dataset of 3 breast cancer subjects. We now report that mice spontaneously developing breast cancer manifest shared, Public CDR3 regions in both their alpha and beta and that a significant number of women with early breast cancer manifest identical CDR3 sequences. These findings suggest that the development of breast cancer is associated, across species, with biomarker, exclusive TCR repertoires.
由检查点阻断诱导的肿瘤免疫疗法取得了部分成功,这种疗法并非抗原特异性的,这表明一些患者的免疫系统含有能够特异性识别肿瘤细胞的抗原受体。在此,我们聚焦于与自发性乳腺癌相关的T细胞受体(TCR)库。我们通过对小鼠细胞群体进行深度测序,研究了CD4 T细胞TCR库的α和β链互补决定区3(CDR3)结构域,并将结果应用于从人类患者获得的已发表TCR序列数据。我们每月筛选5个月内自发发生乳腺肿瘤的个体小鼠的外周血T细胞。然后,我们查看了已发表的人类研究中的相同TCR序列;我们使用了来自1256例乳腺癌切除术的肿瘤和健康组织的TCGA数据,以及来自4项重点研究的数据,这些研究包括肿瘤、淋巴结、血液和健康组织的序列,以及3名乳腺癌受试者的单细胞数据集。我们现在报告,自发发生乳腺癌的小鼠在其α和β链中均表现出共享的公共CDR3区域,并且相当数量的早期乳腺癌女性表现出相同的CDR3序列。这些发现表明,乳腺癌的发展在不同物种间与生物标志物、独特的TCR库相关。