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表型多样的海胆(球海胆科,海胆纲)的完整线粒体基因组。

Complete mitochondrial genome of the phenotypically-diverse sea urchin (Strongylocentrotidae, Echinoidea).

作者信息

Balakirev Evgeniy S, Pavlyuchkov Vladimir A, Ayala Francisco J

机构信息

Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, USA.

A.V. Zhirmunsky Institute of Marine Biology, National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, Russia.

出版信息

Mitochondrial DNA B Resour. 2017 Sep 4;2(2):613-614. doi: 10.1080/23802359.2017.1372727.

DOI:10.1080/23802359.2017.1372727
PMID:33473919
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800726/
Abstract

The complete mitochondrial genomes are sequenced in two individuals representing two morphological forms, 'usual' (U) and 'gray' (G), of the short-spined sea urchin . The genome sequences are 15,705 bp in size, and the gene arrangement, composition, and size are very similar to the other sea urchin mitochondrial genomes published previously. A low level of sequence divergence (  = 0.0083 ± 0.0007) is detected between the forms. The GenBank (KC490912) mt genome of is much closer to the U form (  = 0.0013 ± 0.0003) than to the G form (  = 0.0085 ± 0.0006), demonstrating unique evolutionary trajectories for each form, which we previously suggested based on the gene and symbiont analyses.

摘要

对代表短棘海胆两种形态类型“普通型”(U)和“灰色型”(G)的两个个体的线粒体全基因组进行了测序。基因组序列大小为15,705 bp,其基因排列、组成和大小与先前发表的其他海胆线粒体基因组非常相似。在这两种形态类型之间检测到低水平的序列差异(= 0.0083 ± 0.0007)。GenBank(KC490912)的线粒体基因组与U型(= 0.0013 ± 0.0003)的亲缘关系比与G型(= 0.0085 ± 0.0006)更近,这表明每种形态类型都有独特的进化轨迹,这是我们之前基于基因和共生体分析所提出的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a00/7800726/e38f8a699844/TMDN_A_1372727_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a00/7800726/e38f8a699844/TMDN_A_1372727_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a00/7800726/e38f8a699844/TMDN_A_1372727_F0001_B.jpg

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本文引用的文献

1
DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp. (Echinoidea).三种强壮海胆属物种(海胆纲)中结合蛋白基因座的DNA多态性与选择
BMC Genet. 2016 May 12;17(1):66. doi: 10.1186/s12863-016-0374-5.
2
Conserved PCR primer set designing for closely-related species to complete mitochondrial genome sequencing using a sliding window-based PSO algorithm.基于滑动窗口的粒子群算法设计用于密切相关物种的保守 PCR 引物,以完成线粒体基因组测序。
PLoS One. 2011 Mar 18;6(3):e17729. doi: 10.1371/journal.pone.0017729.
3
DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius.
表型多样的中间球海胆中的DNA变异与共生关系
Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16218-23. doi: 10.1073/pnas.0807860105. Epub 2008 Oct 13.