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延龄草科油点草叶绿体全基因组特征分析

Characterization of the complete chloroplast genome of toad lily (Liliaceae).

作者信息

Wang Rui-Hong, Gao Jing, Wu Xue, Li Meng-Di, Shen Chao, Wu Jun-Jie, Yu Wen-Di, Liu Jin-Liang, Qi Zhe-Chen, Liang Zong-Suo

机构信息

College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou, China.

Zhejiang Province Key Laboratory of Plant Secondary Metabolism and Regulation, Hangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2018 Jan 26;3(1):145-146. doi: 10.1080/23802359.2018.1431069.

Abstract

(Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first chloroplast (cp) genome, , based on Illumina pair-end sequencing data. The complete chloroplast genome size is 155,778 bp. In total, 131 genes were identified, including 85 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Fifteen genes are containing introns ( and contained two introns) and 14 genes had two copies. The overall GC content of this genome was 37.4%. A further phylogenomic analysis of Liliales, including 62 taxa, was conducted for the placement of genus . The complete plastome of will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies in the genus and family.

摘要

(百合科)是东亚特有的属。由于近几十年来栖息地丧失和广泛的园艺利用,该属中的许多物种处于濒危状态。在本研究中,我们基于Illumina双末端测序数据报道了首个叶绿体(cp)基因组, 。完整的叶绿体基因组大小为155,778 bp。总共鉴定出131个基因,包括85个蛋白质编码基因、8个rRNA基因和38个tRNA基因。15个基因含有内含子( 和 含有两个内含子),14个基因有两个拷贝。该基因组的总体GC含量为37.4%。为了确定 属的位置,对包括62个分类单元的百合目进行了进一步的系统基因组分析。 的完整质体基因组将为该属和该科进一步的遗传保护、系统基因组和进化研究提供有价值的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d25e/7800006/97583880434b/TMDN_A_1431069_F0001_C.jpg

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