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(十足目:短尾亚目:方蟹科)的线粒体全基因组及其系统发育。

The complete mitochondrial genome of (Decapoda: Brachyura: Varunidae) and its phylogeny.

作者信息

Lin Fan, Xie Zhuofang, Fazhan Hanafiah, Baylon Juliana C, Yang Xiaolong, Tan Huaqiang, Guan Mengyun, Shi Xi, Ikhwanuddin Mhd, Ma Hongyu

机构信息

Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, China.

Division of Biological Sciences, College of Arts and Sciences, University of the Philippines Visayas, Miagao, Philippines.

出版信息

Mitochondrial DNA B Resour. 2018 Feb 23;3(1):263-264. doi: 10.1080/23802359.2018.1443043.

DOI:10.1080/23802359.2018.1443043
PMID:33474136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799475/
Abstract

The complete mitochondrial genome plays an important role in the research on phylogenetic relationship. Here, we reported the first complete mitochondrial genome sequence of Hwang & Takeda, 1986 (Varunidae). The complete mtDNA (15,915 bp in length) consisted of 13 protein-coding genes, 22 tRNAs, two rRNA genes, and a control region. The gene arrangement was identical to those observed in the Varunidae species. The phylogenetic analysis suggested that had close relationship with other Varunidae species (, , etc.). The newly described genome may facilitate further comparative mitogenomic analysis within Varunidae species.

摘要

完整的线粒体基因组在系统发育关系研究中发挥着重要作用。在此,我们报道了1986年黄与武田(Varunidae)的首个完整线粒体基因组序列。完整的线粒体DNA(长度为15,915 bp)由13个蛋白质编码基因、22个tRNA、两个rRNA基因和一个控制区组成。基因排列与在Varunidae物种中观察到的那些相同。系统发育分析表明,与其他Varunidae物种(、等)关系密切。新描述的基因组可能有助于Varunidae物种内进一步的线粒体基因组比较分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0387/7799475/a271353d69e1/TMDN_A_1443043_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0387/7799475/a271353d69e1/TMDN_A_1443043_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0387/7799475/a271353d69e1/TMDN_A_1443043_F0001_B.jpg

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本文引用的文献

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The complete mitochondrial genome of the swimming crab (Herbst) (Decapoda: Brachyura: Portunidae) and its phylogeny.三疣梭子蟹(赫布斯特)(十足目:短尾亚目:梭子蟹科)的完整线粒体基因组及其系统发育
Mitochondrial DNA B Resour. 2017 Aug 17;2(2):530-531. doi: 10.1080/23802359.2017.1365639.
2
Mitochondrial genome of Helice tientsinensis (Brachyura: Grapsoidea: Varunidae): Gene rearrangements and higher-level phylogeny of the Brachyura.天津厚蟹(短尾下目:方蟹总科:弓蟹科)的线粒体基因组:短尾下目的基因重排与高级系统发育
Gene. 2017 Sep 5;627:307-314. doi: 10.1016/j.gene.2017.06.036. Epub 2017 Jun 19.
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Sequencing complete mitochondrial and plastid genomes.对完整的线粒体和质体基因组进行测序。
Nat Protoc. 2007;2(3):603-14. doi: 10.1038/nprot.2007.59.