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北极虹鳟(胡瓜鱼目,胡瓜鱼科)的完整线粒体基因组

Complete mitochondrial genome of the Arctic rainbow smelt (Osmeriformes, Osmeridae).

作者信息

Balakirev Evgeniy S, Kravchenko Alexandra Yu, Romanov Nikolai S, Ayala Francisco J

机构信息

Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, U.S.A.

National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, Russia.

出版信息

Mitochondrial DNA B Resour. 2018 Aug 27;3(2):879-880. doi: 10.1080/23802359.2018.1501301.

DOI:10.1080/23802359.2018.1501301
PMID:33474351
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799525/
Abstract

The complete mitochondrial genome was sequenced in two individuals of the Arctic rainbow smelt . The genome sequences are 16,615 and 16,616 bp in size, and the gene arrangement, composition, and size are very similar to the other smelt mitochondrial genomes published previously. The difference between the two genomes studied is 0.25%, that is, 5.0 times higher in comparison with close species, the European smelt studied previously. The level of mitochondrial genome divergence between and close osmerid fishes, , and is high enough (6.86-7.54%) to consider all of them as separate biological species.

摘要

对两条北极虹鳟的线粒体全基因组进行了测序。基因组序列大小分别为16,615和16,616碱基对,其基因排列、组成和大小与之前发表的其他胡瓜鱼线粒体基因组非常相似。所研究的这两个基因组之间的差异为0.25%,即与之前研究的近缘物种欧洲胡瓜鱼相比高出5.0倍。与近缘胡瓜鱼科鱼类之间的线粒体基因组差异水平很高(6.86 - 7.54%),足以将它们全部视为独立的生物物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae06/7799525/ee94c879b244/TMDN_A_1501301_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae06/7799525/ee94c879b244/TMDN_A_1501301_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae06/7799525/ee94c879b244/TMDN_A_1501301_F0001_B.jpg

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本文引用的文献

1
Complete mitochondrial genome of the European smelt (Osmeriformes, Osmeridae).欧洲胡瓜鱼(胡瓜鱼目,胡瓜鱼科)的完整线粒体基因组
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2
Conserved PCR primer set designing for closely-related species to complete mitochondrial genome sequencing using a sliding window-based PSO algorithm.基于滑动窗口的粒子群算法设计用于密切相关物种的保守 PCR 引物,以完成线粒体基因组测序。
PLoS One. 2011 Mar 18;6(3):e17729. doi: 10.1371/journal.pone.0017729.
3
A molecular analysis of relationships and biogeography within a species complex of Holarctic fish (genus Osmerus).
全北区鱼类(胡瓜鱼属)一个复合种内的亲缘关系及生物地理学的分子分析
Mol Ecol. 1994 Jun;3(3):235-48. doi: 10.1111/j.1365-294x.1994.tb00057.x.