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利用下一代测序技术获得的苍白海马(辐鳍鱼纲;海龙目;海龙科)的完整线粒体基因组。

The complete mitochondrial genome of the pallid seahorse (Actinopterygii; Syngnathiformes; Syngnathidae) obtained using next-generation sequencing.

作者信息

Asem Alireza, Xu Yun-Sheng, Wang Pei-Zheng, Li Weidong

机构信息

College of Life Sciences and Ecology, Hainan Tropical Ocean University, Sanya, People's Republic of China.

Hainan Engineering Research Center of Seafood, Hainan Tropical Ocean University, Sanya, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2018 Aug 23;3(2):923-924. doi: 10.1080/23802359.2018.1502639.

DOI:10.1080/23802359.2018.1502639
PMID:33474368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800819/
Abstract

The complete mitochondrial genome of was determined to be 16,519 bp long circular molecule with a typical gene arrangement of vertebrate mitochondrial. The complete mitochondrial genomes were obtained by conventional and long PCR. Tree constructed using maximum likelihood based on protein-coding genes and ribosomal RNAs showed close relationship of with spp.

摘要

已确定[物种名称]的完整线粒体基因组是一个长度为16,519 bp的环状分子,具有脊椎动物线粒体典型的基因排列。通过常规PCR和长PCR获得了完整的线粒体基因组。基于蛋白质编码基因和核糖体RNA使用最大似然法构建的系统发育树显示[物种名称]与[其他物种名称]属的物种关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b4c/7800819/896f7e05d026/TMDN_A_1502639_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b4c/7800819/896f7e05d026/TMDN_A_1502639_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b4c/7800819/896f7e05d026/TMDN_A_1502639_F0001_B.jpg

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本文引用的文献

1
The complete mitochondrial genome of the Asian river pipefish (Actinopterygii; Syngnathiformes; Syngnathidae) obtained using next-generation sequencing.利用下一代测序技术获得的亚洲河魨(辐鳍鱼纲;海龙目;海龙科)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2018 Jul 11;3(2):776-777. doi: 10.1080/23802359.2018.1491338.
2
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
3
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.