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敏感性最小化、生物内稳态和信息论。

Sensitivity minimization, biological homeostasis and information theory.

机构信息

Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA.

出版信息

Biol Cybern. 2021 Feb;115(1):103-113. doi: 10.1007/s00422-021-00860-2. Epub 2021 Jan 21.

Abstract

All organisms must be able to adapt to changes in the environment. To this end, they have developed sophisticated regulatory mechanisms to ensure homeostasis. Control engineers, who must design similar regulatory systems, have developed a number of general principles that govern feedback regulation. These lead to constraints which impose trade-offs that arise when developing controllers to minimize the effect of external disturbances on systems. Here, we review some of these trade-offs, particularly Bode's integral formula. We also highlight its connection to information theory, by showing that the constraints in sensitivity minimization can be cast as limitations on the information transmission through a system, and these have their root in causality. Finally, we look at how these constraints arise in two biological systems: glycolytic oscillations and the energy cost of perfect adaptation in a bacterial chemotactic pathway.

摘要

所有生物都必须能够适应环境变化。为此,它们已经发展出了复杂的调节机制以确保体内平衡。必须设计类似调节系统的控制工程师们已经制定了一些指导反馈调节的通用原则。这些原则导致了在开发控制器以最小化外部干扰对系统的影响时出现权衡取舍。在这里,我们回顾了其中的一些权衡取舍,特别是 Bode 的积分公式。我们还通过展示灵敏度最小化的约束条件可以被表述为通过系统传输信息的限制,来突出其与信息论的联系,而这些限制的根源在于因果关系。最后,我们研究了这些约束在两个生物系统中是如何产生的:糖酵解振荡和细菌趋化途径中完美适应的能量成本。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3af8/7818071/6d008d003d14/422_2021_860_Fig1_HTML.jpg

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