Department of Mathematics, The Ohio State University, Columbus, OH 43210, United States.
Department of Molecular Genetics, The Ohio State University, Columbus, OH 43210, United States.
J Theor Biol. 2021 May 21;517:110596. doi: 10.1016/j.jtbi.2021.110596. Epub 2021 Jan 26.
The development of multicellular organisms relies on correct patterns of cell fates to produce functional tissues in the mature organism. A commonly observed developmental pattern consists of alternating cell fates, where neighboring cells take on distinct cell fates characterized by contrasting gene and protein expression levels, and this cell fate pattern repeats over two or more cells. The patterns produced by these fate decisions are regulated by a small number of highly conserved signaling networks, some of which are mediated by long range diffusible signals and others mediated by local contact-dependent signals. However, it is not completely understood how local and long range signals associated with these networks interact to produce fate patterns that are both robust and flexible. Here we analyze mathematical models to investigate the patterning of cell fates in an array of cells, focusing on a two cell repeating pattern. Bifurcation analysis of a multicellular ODE model, where we consider the cells as discrete compartments, suggests that cells must balance sensitivity to external signals with robustness to perturbations. To focus on the patterning dynamics close to the bifurcation point, we derive a continuum PDE model that integrates local and long range signaling. For those cells with dynamics close to the bifurcation point, sensitivity to long range signals determines how far a pattern extends in space, while the number of local signaling connections determines the type of pattern produced. This investigation provides a general framework for understanding developmental patterning, and how both long range and local signals play a role in generating features observed across biology, such as species differences in nematode vulval development and insect bristle patterning, as well as medically relevant processes such as control of stem cell fate in the intestinal crypt.
多细胞生物的发育依赖于正确的细胞命运模式,以在成熟生物体中产生功能性组织。一种常见的发育模式包括交替的细胞命运,其中相邻的细胞具有不同的细胞命运,其特征是基因和蛋白质表达水平的对比,这种细胞命运模式在两个或更多细胞上重复。这些命运决定产生的模式受少数高度保守的信号网络调节,其中一些由长程扩散信号介导,另一些由局部接触依赖性信号介导。然而,完全理解与这些网络相关的局部和远程信号如何相互作用以产生既稳健又灵活的命运模式还不完全清楚。在这里,我们分析数学模型,以研究细胞在细胞阵列中的命运模式,重点是两个细胞重复模式。多细胞 ODE 模型的分岔分析,其中我们将细胞视为离散的隔室,表明细胞必须在对外界信号的敏感性和对扰动的稳健性之间取得平衡。为了关注分岔点附近的模式动力学,我们推导出一个连续 PDE 模型,该模型整合了局部和远程信号。对于那些接近分岔点的动力学的细胞,对远程信号的敏感性决定了模式在空间中的扩展程度,而局部信号连接的数量决定了产生的模式类型。这项研究为理解发育模式提供了一个通用框架,以及远程和本地信号如何在产生跨生物学观察到的特征方面发挥作用,例如线虫腹侧发育和昆虫刚毛模式形成中的物种差异,以及医学相关过程,如肠道隐窝中干细胞命运的控制。