菜豆根瘤菌噬菌体帕洛的全基因组序列
Complete Genome Sequence of Rhizobium phaseoli Podophage Palo.
作者信息
Nabhani Ali, Rushing Leika, Newkirk Heather, Burrowes Ben, Young Ryland, Gonzalez Carlos
机构信息
Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, USA.
Department of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, USA.
出版信息
Microbiol Resour Announc. 2021 Jan 28;10(4):e01443-20. doi: 10.1128/MRA.01443-20.
Abstract
Here, we present the genome of Palo, a T7-like podophage of The genome is 46.3 kb and contains 58 predicted protein-coding genes, including a novel signal-anchor-release (SAR) endolysin, a homolog of the T5 A1 protein required for DNA transfer, and a dual-start holin/antiholin pair.
摘要
在此，我们展示了Palo的基因组，它是一种类似T7的噬菌体。该基因组大小为46.3 kb，包含58个预测的蛋白质编码基因，其中包括一种新型的信号锚定释放（SAR）溶菌酶、DNA转移所需的T5 A1蛋白的同源物以及一对双起始的孔蛋白/抗孔蛋白。
相似文献
1
Complete Genome Sequence of Rhizobium phaseoli Podophage Palo.菜豆根瘤菌噬菌体帕洛的全基因组序列
Microbiol Resour Announc. 2021 Jan 28;10(4):e01443-20. doi: 10.1128/MRA.01443-20.
2
Complete Genome Sequence of Rhizobium japonicum Podophage Pasto.日本根瘤菌噬菌体帕斯托的全基因组序列
Microbiol Resour Announc. 2021 Jan 21;10(3):e01442-20. doi: 10.1128/MRA.01442-20.
3
Cloning of the nodulation (nod) genes of Rhizobium phaseoli and their homology to R. leguminosarum nod DNA.菜豆根瘤菌结瘤（nod）基因的克隆及其与豌豆根瘤菌nod DNA的同源性
Gene. 1985;34(2-3):235-41. doi: 10.1016/0378-1119(85)90132-5.
4
Complete Genome Sequence of Bradyrhizobium japonicum Podophage Paso.慢生根瘤菌日本豆噬菌体Paso的全基因组序列
Microbiol Resour Announc. 2021 Feb 4;10(5):e01444-20. doi: 10.1128/MRA.01444-20.
5
Complete Genome Sequence of Serratia marcescens Podophage Pila.粘质沙雷氏菌噬菌体Pila的全基因组序列
Microbiol Resour Announc. 2020 Jan 2;9(1):e01420-19. doi: 10.1128/MRA.01420-19.
6
Complete Genome Sequence of Stenotrophomonas maltophilia Podophage Ponderosa.嗜麦芽窄食单胞菌噬菌体庞德罗萨的全基因组序列
Microbiol Resour Announc. 2019 Sep 26;8(39):e01032-19. doi: 10.1128/MRA.01032-19.
7
Identification and characterization of a Rhizobium leguminosarum bv. phaseoli gene that is important for nodulation competitiveness and shows structural homology to a Rhizobium fredii host-inducible gene.菜豆根瘤菌菜豆生物型中一个对结瘤竞争力很重要且与费氏中华根瘤菌宿主诱导基因具有结构同源性的基因的鉴定与表征
Mol Plant Microbe Interact. 1995 May-Jun;8(3):468-72. doi: 10.1094/mpmi-8-0468.
8
High-frequency rearrangements in Rhizobium leguminosarum bv. phaseoli plasmids.菜豆根瘤菌菜豆生物变种质粒中的高频重排
J Bacteriol. 1991 Feb;173(3):1344-6. doi: 10.1128/jb.173.3.1344-1346.1991.
9
Characterization of Rhizobium phaseoli Sym plasmid regions involved in nodule morphogenesis and host-range specificity.菜豆根瘤菌共生质粒中参与根瘤形态发生和宿主范围特异性区域的特性分析
Mol Microbiol. 1989 Jul;3(7):879-89. doi: 10.1111/j.1365-2958.1989.tb00237.x.
10
Genomic insight into the taxonomy of Rhizobium genospecies that nodulate Phaseolus vulgaris.从基因组角度洞察能与菜豆属植物共生固氮的根瘤菌种下分类单元。
Syst Appl Microbiol. 2018 Jul;41(4):300-310. doi: 10.1016/j.syapm.2018.03.001. Epub 2018 Mar 16.
引用本文的文献
1
The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages: Evidence for a lytic deferment pathway.转录调节因子CtrA控制α-变形菌噬菌体中的基因表达：一种裂解延迟途径的证据。
Front Microbiol. 2022 Aug 19;13:918015. doi: 10.3389/fmicb.2022.918015. eCollection 2022.
本文引用的文献
1
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation.Galaxy 和 Apollo 作为一个对生物学家友好的接口，用于高质量的合作噬菌体基因组注释。
PLoS Comput Biol. 2020 Nov 2;16(11):e1008214. doi: 10.1371/journal.pcbi.1008214. eCollection 2020 Nov.
2
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Galaxy 平台，用于实现可访问、可重现和协作的生物医学分析：2020 年更新。
Nucleic Acids Res. 2020 Jul 2;48(W1):W395-W402. doi: 10.1093/nar/gkaa434.
3
Apollo: Democratizing genome annotation.阿波罗：基因组注释的民主化。
PLoS Comput Biol. 2019 Feb 6;15(2):e1006790. doi: 10.1371/journal.pcbi.1006790. eCollection 2019 Feb.
4
UniProt: the universal protein knowledgebase.通用蛋白质知识库：UniProt
Nucleic Acids Res. 2018 Mar 16;46(5):2699. doi: 10.1093/nar/gky092.
5
PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data.噬菌体末端和包装机制的快速准确确定工具：基于下一代测序数据的噬菌体末端和包装机制的快速准确确定工具。
Sci Rep. 2017 Aug 15;7(1):8292. doi: 10.1038/s41598-017-07910-5.
6
Nitrogen-fixing rhizobial strains isolated from common bean seeds: phylogeny, physiology, and genome analysis.从菜豆种子中分离出的固氮根瘤菌菌株：系统发育、生理学及基因组分析
Appl Environ Microbiol. 2014 Sep;80(18):5644-54. doi: 10.1128/AEM.01491-14. Epub 2014 Jul 7.
7
InterProScan 5: genome-scale protein function classification.InterProScan 5：基因组规模的蛋白质功能分类。
Bioinformatics. 2014 May 1;30(9):1236-40. doi: 10.1093/bioinformatics/btu031. Epub 2014 Jan 21.
8
Narrow-host-range bacteriophages that infect Rhizobium etli associate with distinct genomic types.感染菜豆根瘤菌的窄宿主范围噬菌体与不同的基因组类型相关。
Appl Environ Microbiol. 2014 Jan;80(2):446-54. doi: 10.1128/AEM.02256-13. Epub 2013 Nov 1.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.渐进紫：具有基因增益、缺失和重排的多基因组比对。
PLoS One. 2010 Jun 25;5(6):e11147. doi: 10.1371/journal.pone.0011147.
Zotero 插件