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Galaxy 平台,用于实现可访问、可重现和协作的生物医学分析:2020 年更新。

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.

机构信息

Department of Biomedical Engineering, Oregon Health & Science University, Portland, OR, USA.

Department of Biology, Johns Hopkins University, Baltimore, MD, USA.

出版信息

Nucleic Acids Res. 2020 Jul 2;48(W1):W395-W402. doi: 10.1093/nar/gkaa434.

Abstract

Galaxy (https://galaxyproject.org) is a web-based computational workbench used by tens of thousands of scientists across the world to analyze large biomedical datasets. Since 2005, the Galaxy project has fostered a global community focused on achieving accessible, reproducible, and collaborative research. Together, this community develops the Galaxy software framework, integrates analysis tools and visualizations into the framework, runs public servers that make Galaxy available via a web browser, performs and publishes analyses using Galaxy, leads bioinformatics workshops that introduce and use Galaxy, and develops interactive training materials for Galaxy. Over the last two years, all aspects of the Galaxy project have grown: code contributions, tools integrated, users, and training materials. Key advances in Galaxy's user interface include enhancements for analyzing large dataset collections as well as interactive tools for exploratory data analysis. Extensions to Galaxy's framework include support for federated identity and access management and increased ability to distribute analysis jobs to remote resources. New community resources include large public servers in Europe and Australia, an increasing number of regional and local Galaxy communities, and substantial growth in the Galaxy Training Network.

摘要

银河(https://galaxyproject.org)是一个基于网络的计算工作台,全球数以万计的科学家使用它来分析大型生物医学数据集。自 2005 年以来,银河项目培育了一个全球性的社区,专注于实现可访问、可重复和协作的研究。这个社区共同开发银河软件框架,将分析工具和可视化集成到框架中,运行公共服务器,通过网络浏览器提供银河服务,使用银河进行分析和发表,领导介绍和使用银河的生物信息学研讨会,并为银河开发互动培训材料。在过去的两年中,银河项目的各个方面都在发展:代码贡献、集成的工具、用户和培训材料。银河用户界面的关键进展包括增强了对大型数据集集合的分析功能,以及用于探索性数据分析的交互式工具。银河框架的扩展包括对联合身份和访问管理的支持,以及增加将分析作业分配到远程资源的能力。新的社区资源包括欧洲和澳大利亚的大型公共服务器、越来越多的区域和本地银河社区,以及银河培训网络的大幅增长。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49d4/7319590/ae36c3f84338/gkaa434fig1.jpg

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