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从从头算分子动力学中提取的实验和计算红外光谱的定量比较。

Quantitative Comparison of Experimental and Computed IR-Spectra Extracted from Ab Initio Molecular Dynamics.

机构信息

Chair of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), Butenandtstr. 7, D-81377 München, Germany.

出版信息

J Chem Theory Comput. 2021 Feb 9;17(2):985-995. doi: 10.1021/acs.jctc.0c01279. Epub 2021 Jan 29.

Abstract

Experimentally measured infrared spectra are often compared to their computed equivalents. However, the accordance is typically characterized by visual inspection, which is prone to subjective judgment. The primary challenge for a similarity-based analysis is that the artifacts introduced by each approach are very different and, therefore, may require preprocessing steps to determine and correct impeding irregularities. To allow for automated objective assessment, we propose a practical and comprehensive workflow involving scaling factors, a novel baseline correction scheme, and peak smoothing. The resulting spectra can then easily be compared quantitatively using similarity measures, for which we found the Pearson correlation coefficient to be the most suitable. The proposed procedure is then applied to compare the agreement of the experimental infrared spectra from the NIST Chemistry Web book with the calculated spectra using standard harmonic frequency analysis and spectra extracted from ab initio molecular dynamics simulations at different levels of theory. We conclude that the direct, quantitative comparison of calculated and measured IR spectra might become a novel, sophisticated approach to benchmark quantum-chemical methods. In the present benchmark, simulated spectra based on ab initio molecular dynamics show in general better agreement with the experiment than static calculations.

摘要

实验测量的红外光谱通常与计算得到的光谱进行比较。然而,通常是通过肉眼观察来判断其一致性,这种方法容易受到主观判断的影响。基于相似性的分析主要面临的挑战是,两种方法引入的伪影差异很大,因此可能需要预处理步骤来确定和纠正阻碍不规则性的因素。为了实现自动化的客观评估,我们提出了一种实用且全面的工作流程,其中包括缩放因子、一种新的基线校正方案和峰平滑处理。然后可以使用相似性度量来对处理后的光谱进行定量比较,我们发现 Pearson 相关系数是最适合的。然后,我们将该程序应用于比较 NIST Chemistry WebBook 中实验红外光谱与使用标准谐波频率分析和不同理论水平的从头算分子动力学模拟提取的光谱计算得到的光谱之间的一致性。我们得出的结论是,直接、定量地比较计算和测量的红外光谱可能成为基准量子化学方法的一种新的、复杂的方法。在本基准中,基于从头算分子动力学的模拟光谱通常比静态计算与实验结果更吻合。

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