Fouqueau Thomas, Blombach Fabian, Cackett Gwenny, Carty Alice E, Matelska Dorota M, Ofer Sapir, Pilotto Simona, Phung Duy Khanh, Werner Finn
RNAP laboratory, Institute of Structural and Molecular Biology, Division of Biosciences, University College London, Gower Street, London WC1E 6BT, U.K.
Emerg Top Life Sci. 2018 Dec 14;2(4):517-533. doi: 10.1042/ETLS20180014.
The archaeal RNA polymerase (RNAP) is a double-psi β-barrel enzyme closely related to eukaryotic RNAPII in terms of subunit composition and architecture, promoter elements and basal transcription factors required for the initiation and elongation phase of transcription. Understanding archaeal transcription is, therefore, key to delineate the universally conserved fundamental mechanisms of transcription as well as the evolution of the archaeo-eukaryotic transcription machineries. The dynamic interplay between RNAP subunits, transcription factors and nucleic acids dictates the activity of RNAP and ultimately gene expression. This review focusses on recent progress in our understanding of (i) the structure, function and molecular mechanisms of known and less characterized factors including Elf1 (Elongation factor 1), NusA (N-utilization substance A), TFS4, RIP and Eta, and (ii) their evolution and phylogenetic distribution across the expanding tree of Archaea.
古菌RNA聚合酶(RNAP)是一种双ψβ桶状酶,在亚基组成和结构、转录起始和延伸阶段所需的启动子元件以及基础转录因子方面,与真核生物RNAPII密切相关。因此,了解古菌转录是描绘转录普遍保守的基本机制以及古菌 - 真核生物转录机制进化的关键。RNAP亚基、转录因子和核酸之间的动态相互作用决定了RNAP的活性,最终决定了基因表达。本综述重点关注我们在理解以下方面的最新进展:(i)已知和较少特征化的因子的结构、功能和分子机制,包括Elf1(延伸因子1)、NusA(N利用物质A)、TFS4、RIP和Eta,以及(ii)它们在不断扩展的古菌树中的进化和系统发育分布。