School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551.
Biochemistry. 2021 Feb 16;60(6):431-439. doi: 10.1021/acs.biochem.0c00662. Epub 2021 Feb 3.
The field of protein design has met with considerable success over the past few decades. Heme, a cofactor, has often been introduced to impart a diverse array of functions to a protein, ranging from electron transport to respiration. In nature, heme is found to occur predominantly in α-helical structures over β-sheets, which has resulted in significant designs of heme proteins utilizing coiled-coil helices. By contrast, there are only a few known β-sheet proteins that bind heme and designs of β-sheets frequently result in amyloid-like aggregates. This review reflects on our success in designing a series of multistranded β-sheet heme binding peptides that are well folded in both aqueous and membrane-like environments. Initially, we designed a β-hairpin peptide that self-assembles to bind heme and performs peroxidase activity in membrane. The β-hairpin was optimized further to accommodate a heme binding pocket within multistranded β-sheets for catalysis and electron transfer in membranes. Furthermore, we designed and characterized β-sheet peptides and miniproteins that are soluble in an aqueous environment capable of binding single and multiple hemes with high affinity and stability. Collectively, these studies highlight the substantial progress made toward the design of functional β-sheets.
在过去的几十年中,蛋白质设计领域取得了相当大的成功。血红素作为一种辅因子,经常被引入蛋白质中,赋予其从电子传递到呼吸等多种功能。在自然界中,血红素主要存在于α-螺旋结构中,而不是β-折叠结构,这导致了大量利用卷曲螺旋的血红素蛋白的设计。相比之下,只有少数已知的结合血红素的β-折叠蛋白,并且β-折叠结构的设计经常导致类淀粉样聚集。这篇综述反映了我们在设计一系列具有多股β-折叠血红素结合肽方面的成功经验,这些肽在水相和类膜环境中都能很好地折叠。最初,我们设计了一种β-发夹肽,它可以自组装并结合血红素,在膜中具有过氧化物酶活性。我们进一步优化了β-发夹肽,以在多股β-折叠中容纳一个血红素结合口袋,用于在膜中进行催化和电子转移。此外,我们设计并表征了在水相环境中可溶性的β-折叠肽和小蛋白,它们能够以高亲和力和稳定性结合单个和多个血红素。总的来说,这些研究突出了在设计功能性β-折叠方面取得的重大进展。