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一种 II 型折叠 PLP 依赖性酶,来自 ,具有丝氨酸合成酶和半胱氨酸合成酶的功能。

A Fold Type II PLP-Dependent Enzyme from Functions as a Serine Synthase and Cysteine Synthase.

机构信息

Department of Chemistry, University of British Columbia, Okanagan Campus, 3247 University Way, Kelowna, BC V1V 1V7, Canada.

出版信息

Biochemistry. 2021 Feb 23;60(7):524-536. doi: 10.1021/acs.biochem.0c00902. Epub 2021 Feb 4.

DOI:10.1021/acs.biochem.0c00902
PMID:33539704
Abstract

Serine synthase (SS) from is a fold type II pyridoxal 5'-phosphate (PLP)-dependent enzyme that catalyzes the β-replacement of l-cysteine with water to form l-serine and HS. Herein, we show that SS can also function as a cysteine synthase, catalyzing the β-replacement of l-serine with bisulfide to produce l-cysteine and HO. The forward (serine synthase) and reverse (cysteine synthase) reactions occur with comparable turnover numbers and catalytic efficiencies for the amino acid substrate. Reaction of SS with l-cysteine leads to transient formation of a quinonoid species, suggesting that deprotonation of the Cα and β-elimination of the thiolate group from l-cysteine occur via a stepwise mechanism. In contrast, the quinonoid species was not detected in the formation of the α-aminoacrylate intermediate following reaction of SS with l-serine. A key active site residue, D232, was shown to stabilize the more chemically reactive ketoenamine PLP tautomer and also function as an acid/base catalyst in the forward and reverse reactions. Fluorescence resonance energy transfer between PLP and W99, the enzyme's only tryptophan residue, supports ligand-induced closure of the active site, which shields the PLP cofactor from the solvent and increases the basicity of D232. These results provide new insight into amino acid metabolism in and highlight the multiple catalytic roles of D232 in a new member of the fold type II family of PLP-dependent enzymes.

摘要

来自 的丝氨酸合酶(SS)是一种折叠类型 II 吡哆醛 5′-磷酸(PLP)依赖性酶,可催化 l-半胱氨酸与水的β-取代反应,生成 l-丝氨酸和 HS。在此,我们表明 SS 还可以作为半胱氨酸合酶发挥作用,催化 l-丝氨酸与双硫代物的β-取代反应,生成 l-半胱氨酸和 HO。正向(丝氨酸合酶)和反向(半胱氨酸合酶)反应以相当的周转率和催化效率发生在氨基酸底物上。SS 与 l-半胱氨酸的反应导致瞬态形成醌型物质,表明 l-半胱氨酸的 Cα去质子化和硫醇基团的β-消除通过逐步机制发生。相比之下,在 SS 与 l-丝氨酸反应形成α-氨基丙烯酸中间体时,未检测到醌型物质。关键的活性位点残基 D232 被证明可以稳定更具反应性的酮烯胺 PLP 互变异构体,并在正向和反向反应中作为酸/碱催化剂发挥作用。PLP 和 W99(酶的唯一色氨酸残基)之间的荧光共振能量转移支持配体诱导的活性位点闭合,该闭合将 PLP 辅因子与溶剂隔离,并增加 D232 的碱性。这些结果为 中的氨基酸代谢提供了新的见解,并强调了 D232 在 PLP 依赖性酶折叠类型 II 家族的新成员中的多种催化作用。

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