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从耐盐Pokkali水稻根际分离的稻黄杆菌L3B39的基因组草图序列

Draft Genome Sequence of Vogesella oryzae L3B39, Isolated from the Rhizosphere of Saline-Tolerant Pokkali Rice.

作者信息

Kangale Luis Johnson, Levasseur Anthony, Anani Hussein, Raoult Didier, Ghigo Eric, Fournier Pierre-Edouard

机构信息

Aix-Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France.

IHU-Méditerranée-Infection, Marseille, France.

出版信息

Microbiol Resour Announc. 2021 Feb 4;10(5):e00515-20. doi: 10.1128/MRA.00515-20.

DOI:10.1128/MRA.00515-20
PMID:33541871
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7862949/
Abstract

Here, we report the draft genome sequence of L3B39 (CSUR Q2602 = DSM 28780), which is a species isolated from the rhizosphere of saline-tolerant pokkali rice. The genome sequence was assembled into 58 contigs for a total size of 3,415,129 bp, with a G+C content of 62.3%.

摘要

在此,我们报告了L3B39(CSUR Q2602 = DSM 28780)的基因组序列草图,该菌株是从耐盐Pokkali水稻根际分离出的一个物种。基因组序列被组装成58个重叠群,总大小为3,415,129 bp,G+C含量为62.3%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b62/7862949/dfb18c689adb/MRA.00515-20-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b62/7862949/dfb18c689adb/MRA.00515-20-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b62/7862949/dfb18c689adb/MRA.00515-20-f0001.jpg

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本文引用的文献

1
FastQ Screen: A tool for multi-genome mapping and quality control.FastQ Screen:一种用于多基因组比对和质量控制的工具。
F1000Res. 2018 Aug 24;7:1338. doi: 10.12688/f1000research.15931.2. eCollection 2018.
2
MiSeq: A Next Generation Sequencing Platform for Genomic Analysis.MiSeq:用于基因组分析的新一代测序平台。
Methods Mol Biol. 2018;1706:223-232. doi: 10.1007/978-1-4939-7471-9_12.
3
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Description of Vogesella oryzae sp. nov., isolated from the rhizosphere of saline tolerant pokkali rice.从耐盐性博卡利水稻根际分离的稻栖沃氏菌新种的描述
Syst Appl Microbiol. 2016 Feb;39(1):20-4. doi: 10.1016/j.syapm.2015.10.003. Epub 2015 Nov 10.
5
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI:一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.
6
Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.系统发生基因组学和分子特征用于奈瑟菌目:奈瑟菌目修订为奈瑟菌科和新Chromobacteriaceae 科的建议。
Antonie Van Leeuwenhoek. 2013 Jul;104(1):1-24. doi: 10.1007/s10482-013-9920-6. Epub 2013 Apr 11.
7
Toward almost closed genomes with GapFiller.使用 GapFiller 实现近乎闭合的基因组。
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
10
Vogesella mureinivorans sp. nov., a peptidoglycan-degrading bacterium from lake water.沃格氏黏质球菌,一种来自湖水的肽聚糖降解细菌。
Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2467-2472. doi: 10.1099/ijs.0.018630-0. Epub 2009 Nov 27.