Fang S Y, Dai X H, Xiao L, Zou J, Yang L, Ye Y, Liao L C
West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu 610041, China.
Fa Yi Xue Za Zhi. 2020 Dec;36(6):741-748. doi: 10.12116/j.issn.1004-5619.2020.06.001.
Objective To establish the orthogonal partial least square (OPLS) model for the estimation of early postmortem interval (PMI) of asphyxial death rats in four ambient temperatures based on gas chromatography-mass spectrometry (GC-MS) metabolomics. Methods The 96 rats were divided into four temperature groups (5 ℃, 15 ℃, 25 ℃ and 35 ℃). Each temperature group was further divided into 3 h, 6 h, 12 h and 24 h after death, and 6 other rats were taken as the control group. The cardiac blood was collected at the set time points for the four temperature groups and 0 h after death for the control group for the metabolomics analysis by GC-MS. By OPLS analysis, the variable importance in projection (VIP)>1 and the result of Kruskal-Wallis test P<0.001 were used to screen out the differential metabolite related to PMIs in the cardiac blood of rats of different temperature groups. Then OPLS regression models of different temperature groups were established with these metabolites. At the same time, a prediction group for investigating the prediction ability of these models was set up. Results Through the analysis of OPLS, 18, 15, 24 and 30 differential metabolites (including organic acids, amino acids, sugars and lipids) were screened out from the rats in groups of 5 ℃, 15 ℃, 25 ℃ and 35 ℃, respectively. The prediction results of the four temperature group models showed that the prediction deviation of 5 ℃ model was larger than that of other groups. The prediction results of other temperature groups were satisfactory. Conclusion There are some differences in the changes of metabolites in cardiac blood of rats at different ambient temperatures. The influence of ambient temperature should be investigated in the study of PMI estimation by metabolomics, which may improve the accuracy of PMI estimation.
目的 基于气相色谱 - 质谱联用(GC - MS)代谢组学建立正交偏最小二乘法(OPLS)模型,用于估算四种环境温度下窒息死亡大鼠的早期死后间隔时间(PMI)。方法 将96只大鼠分为四个温度组(5℃、15℃、25℃和35℃)。每个温度组在死后又进一步分为3小时、6小时、12小时和24小时组,另取6只大鼠作为对照组。在设定时间点采集四个温度组大鼠的心腔血以及对照组死后0小时的心腔血,采用GC - MS进行代谢组学分析。通过OPLS分析,以投影变量重要性(VIP)>1且Kruskal - Wallis检验结果P<0.001为标准,筛选出不同温度组大鼠心腔血中与PMI相关的差异代谢物。然后用这些代谢物建立不同温度组的OPLS回归模型。同时,设立一个预测组来考察这些模型的预测能力。结果 通过OPLS分析,分别从5℃、15℃、25℃和35℃组的大鼠中筛选出18种、15种、24种和30种差异代谢物(包括有机酸、氨基酸、糖类和脂质)。四个温度组模型的预测结果显示,5℃模型的预测偏差大于其他组。其他温度组的预测结果令人满意。结论 不同环境温度下大鼠心腔血中代谢物变化存在差异。在代谢组学研究PMI估算时应考虑环境温度的影响,这可能提高PMI估算的准确性。