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基因组分析揭示广古菌门在厌氧生物地球化学循环中的生态分布及潜在作用

Ecological distribution and potential roles of Woesearchaeota in anaerobic biogeochemical cycling unveiled by genomic analysis.

作者信息

Liu Xiaobo, Wang Yali, Gu Ji-Dong

机构信息

Environmental Engineering Program, Guangdong Technion-Israel Institute of Technology (GTIIT), 241 Daxue Road, Shantou 515063, Guangdong, China.

Conservation Center, Guangdong Museum, 2 Zhujiang East Road, Tianhe District, Guangzhou 510623, Guangdong, China.

出版信息

Comput Struct Biotechnol J. 2021 Jan 16;19:794-800. doi: 10.1016/j.csbj.2021.01.013. eCollection 2021.

Abstract

Woesearchaeota as a newly established member of the superphylum DPANN (Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota and Nanohaloarchaea) are surprisingly abundant and diverse in a wide variety of environments, including deep oil reservoir, sulfuric springs and anoxic aquifers, indicating a high diversity of their roles in global biogeochemical cycles. However, ecological functions of them remain elusive. To fill up this gap, we analyzed and compared the global distribution patterns of Woesearchaeota using the genomes available publicly. As a result, both ecological distribution patterns and metabolic predictions support a key role of woesearchaeotal lineages in cycling of carbon, nitrogen, and sulfur. Multivariate regression analysis reveals that Woesearchaeota might function in consortium with methanogens in the cycling of carbon in anaerobic environments, particularly in soils or sediments. Moreover, comparative genomic analysis and ecological distribution suggest the potential roles of Woesearchaeota in the processes of denitrification, nitrogen fixation, and dissimilatory nitrite reduction, especially in the wastewater treatment systems; and also uncovered the potential capability of sulfate reduction, sulfide oxidation and thiosulfate oxidation in sulfuric or sulfidic-rich environments. Our findings add more information into the ecological roles of archaea in the anoxic environment.

摘要

奇古菌门作为新近确立的DPANN超门(包括Diapherotrites、Parvarchaeota、Aenigmarchaeota、Nanoarchaeota和Nanohaloarchaea)的一个成员,在包括深层油藏、硫磺泉和缺氧含水层在内的各种环境中惊人地丰富多样,这表明它们在全球生物地球化学循环中具有高度多样化的作用。然而,它们的生态功能仍然难以捉摸。为了填补这一空白,我们利用公开可用的基因组分析并比较了奇古菌门的全球分布模式。结果表明,生态分布模式和代谢预测都支持奇古菌门谱系在碳、氮和硫循环中发挥关键作用。多元回归分析表明,在厌氧环境(特别是在土壤或沉积物中)的碳循环中,奇古菌门可能与产甲烷菌协同发挥作用。此外,比较基因组分析和生态分布表明,奇古菌门在反硝化、固氮和异化亚硝酸盐还原过程中具有潜在作用,特别是在废水处理系统中;同时还揭示了在富含硫酸或硫化物的环境中,奇古菌门具有硫酸盐还原、硫化物氧化和硫代硫酸盐氧化的潜在能力。我们的研究结果为古菌在缺氧环境中的生态作用增添了更多信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37b6/7844129/8bdb312c6947/ga1.jpg

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