Center for Integrated Neuroscience and Human Behavior, Brain Institute, Department of Pediatrics, University of Utah, Salt Lake City, UT 84112, USA.
Department of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
Hum Mol Genet. 2021 Apr 30;30(6):411-429. doi: 10.1093/hmg/ddab041.
Gene networks for disorders of social behavior provide the mechanisms critical for identifying therapeutic targets and biomarkers. Large behavioral phenotypic effects of small human deletions make the positive sociality of Williams syndrome (WS) ideal for determining transcriptional networks for social dysfunction currently based on DNA variations for disorders such as autistic spectrum disorder (ASD) and schizophrenia (SCHZ). Consensus on WS networks has been elusive due to the need for larger cohort size, sensitive genome-wide detection and analytic tools. We report a core set of WS network perturbations in a cohort of 58 individuals (34 with typical, 6 atypical deletions and 18 controls). Genome-wide exon-level expression arrays robustly detected changes in differentially expressed gene (DEG) transcripts from WS deleted genes that ranked in the top 11 of 12 122 transcripts, validated by quantitative reverse transcription PCR, RNASeq and western blots. WS DEG's were strictly dosed in the full but not the atypical deletions that revealed a breakpoint position effect on non-deleted CLIP2, a caveat for current phenotypic mapping based on copy number variants. Network analyses tested the top WS DEG's role in the dendritic spine, employing GeneMANIA to harmonize WS DEGs with comparable query gene-sets. The results indicate perturbed actin cytoskeletal signaling analogous to the excitatory dendritic spines. Independent protein-protein interaction analyses of top WS DEGs generated a 100-node graph annotated topologically revealing three interacting pathways, MAPK, IGF1-PI3K-AKT-mTOR/insulin and actin signaling at the synapse. The results indicate striking similarity of WS transcriptional networks to genome-wide association study-based ASD and SCHZ risk suggesting common network dysfunction for these disorders of divergent sociality.
社交行为障碍的基因网络为确定治疗靶点和生物标志物提供了关键机制。人类小缺失对行为表型有很大影响,这使得威廉姆斯综合征(WS)的积极社交性非常适合确定目前基于自闭症谱系障碍(ASD)和精神分裂症(SCHZ)等疾病的 DNA 变异的社交功能障碍的转录网络。由于需要更大的队列规模、敏感的全基因组检测和分析工具,WS 网络的共识一直难以达成。我们报告了一个由 58 个人组成的队列中的一组 WS 网络扰动(34 个具有典型、6 个非典型缺失和 18 个对照)。全基因组外显子水平表达谱阵列稳健地检测到 WS 缺失基因的差异表达基因(DEG)转录本的变化,这些基因在 12122 个转录本中排名前 11,通过定量逆转录 PCR、RNASeq 和 Western blot 验证。WS DEG 在完全缺失中严格剂量,但在非典型缺失中没有,这揭示了非缺失 CLIP2 上的断点位置效应,这是目前基于拷贝数变异的表型映射的一个注意事项。网络分析测试了 top WS DEG 在树突棘中的作用,利用 GeneMANIA 将 WS DEG 与可比查询基因集协调。结果表明,肌动蛋白细胞骨架信号受到干扰,类似于兴奋性树突棘。对 top WS DEG 的独立蛋白质-蛋白质相互作用分析生成了一个包含 100 个节点的图,拓扑注释显示了三个相互作用途径,MAPK、IGF1-PI3K-AKT-mTOR/胰岛素和突触处的肌动蛋白信号。结果表明,WS 转录网络与基于全基因组关联研究的 ASD 和 SCHZ 风险非常相似,这表明这些社交行为障碍存在共同的网络功能障碍。