Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, Jamia Nagar, New Delhi, India.
Department of Clinical Microbiology and Infectious Diseases, School of Pathology, University of the Witwatersrand, Johannesburg, South Africa; Drug Discovery and Development Centre (H3D), University of Cape Town, Rondebosch 7701, South Africa.
J Biomol Struct Dyn. 2022 Sep;40(14):6350-6362. doi: 10.1080/07391102.2021.1882341. Epub 2021 Feb 10.
Sphingosine kinase 1 (SphK1) and sphingosine-1-phosphate (S1P) signaling regulates numerous diseases such as cancer, diabetes, and inflammation-related ailments, rheumatoid arthritis, atherosclerosis, and multiple sclerosis. The importance of SphK1 in chemo-resistance has been extensively explored in breast, lung, colon, and hepatocellular carcinomas. SphK1 is considered an attractive drug target for the development of anticancer therapy. New drug molecules targeting the S1P signaling are required owing to its pleiotropic nature and association with multiple downstream targets. Here, we have investigated the binding affinity and SphK1 inhibitory potential of cinchonine and colcemid using a combined molecular docking and simulation studies followed by experimental analysis. These compounds bind to SphK1 with a significantly high affinity and subsequently inhibit kinase activity (IC 7-9 μM). Further, MD simulation studies revealed that both cinchonine and colcemid bind to the residues at the active site pocket of SphK1 with several non-covalent interactions, which may be responsible for inhibiting its kinase activity. Besides, the binding of cinchonine and colcemid causes substantial conformational changes in the structure of SphK1. Taken together, cinchonine and colcemid may be implicated in designing potential drug molecules with improved affinity and specificity for SphK1 targeting anticancer therapy.Communicated by Ramaswamy H. Sarma.
鞘氨醇激酶 1(SphK1)和鞘氨醇-1-磷酸(S1P)信号转导调节许多疾病,如癌症、糖尿病和炎症相关疾病、类风湿性关节炎、动脉粥样硬化和多发性硬化症。SphK1 在化疗耐药性中的重要性在乳腺癌、肺癌、结肠癌和肝细胞癌中得到了广泛的研究。SphK1 被认为是开发抗癌治疗的有吸引力的药物靶点。由于其多效性和与多个下游靶点的关联,需要针对 S1P 信号的新的药物分子。在这里,我们使用组合的分子对接和模拟研究以及实验分析研究了金鸡纳碱和秋水仙碱对 SphK1 的结合亲和力和抑制潜力。这些化合物与 SphK1 具有显著高的亲和力结合,并随后抑制激酶活性(IC 7-9 μM)。此外,MD 模拟研究表明,金鸡纳碱和秋水仙碱都与 SphK1 的活性口袋中的残基结合,通过几种非共价相互作用,这可能是负责抑制其激酶活性。此外,金鸡纳碱和秋水仙碱的结合导致 SphK1 结构的构象发生实质性变化。总之,金鸡纳碱和秋水仙碱可能与设计具有改善的亲和力和特异性的潜在药物分子有关,用于 SphK1 靶向的抗癌治疗。由 Ramaswamy H. Sarma 交流。