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揭开不明原因慢性肾脏病(CKDu)的神秘面纱:农药及其代谢物与重要肾脏酶的计算相互作用分析。

Demystifying Chronic Kidney Disease of Unknown Etiology (CKDu): Computational Interaction Analysis of Pesticides and Metabolites with Vital Renal Enzymes.

机构信息

Department of Chemistry, Faculty of Science, University of Kelaniya, Dalugama, Kelaniya 11600, Western Province, Sri Lanka.

出版信息

Biomolecules. 2021 Feb 10;11(2):261. doi: 10.3390/biom11020261.

Abstract

Chronic kidney disease of unknown etiology (CKDu) has been recognized as a global non-communicable health issue. There are many proposed risk factors for CKDu and the exact reason is yet to be discovered. Understanding the inhibition or manipulation of vital renal enzymes by pesticides can play a key role in understanding the link between CKDu and pesticides. Even though it is very important to take metabolites into account when investigating the relationship between CKDu and pesticides, there is a lack of insight regarding the effects of pesticide metabolites towards CKDu. In this study, a computational approach was used to study the effects of pesticide metabolites on CKDu. Further, interactions of selected pesticides and their metabolites with renal enzymes were studied using molecular docking and molecular dynamics simulation studies. It was evident that some pesticides and metabolites have affinity to bind at the active site or at regulatory sites of considered renal enzymes. Another important discovery was the potential of some metabolites to have higher binding interactions with considered renal enzymes compared to the parent pesticides. These findings raise the question of whether pesticide metabolites may be a main risk factor towards CKDu.

摘要

原因不明的慢性肾病(CKDu)已被认为是一个全球性的非传染性健康问题。有许多被提出的 CKDu 风险因素,但确切的原因尚未被发现。了解农药对重要肾脏酶的抑制或操纵,可以在理解 CKDu 和农药之间的联系方面发挥关键作用。尽管在研究 CKDu 和农药之间的关系时考虑代谢物非常重要,但对于农药代谢物对 CKDu 的影响缺乏深入的了解。在这项研究中,使用计算方法研究了农药代谢物对 CKDu 的影响。此外,还使用分子对接和分子动力学模拟研究了选定农药及其代谢物与肾脏酶的相互作用。显然,一些农药和代谢物具有在考虑的肾脏酶的活性部位或调节部位结合的亲和力。另一个重要的发现是,一些代谢物与考虑的肾脏酶的结合相互作用的潜力可能高于母体农药。这些发现提出了一个问题,即农药代谢物是否可能是 CKDu 的主要风险因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62e8/7916818/51c1f99c2fb9/biomolecules-11-00261-g001.jpg

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