Department of Biotechnology, Indian Institute of Technology Roorkee, Roorkee 247667, India.
Laboratory for Structural Bioinformatics, Center for Biosystems Dynamics Research, RIKEN, Yokohama, Kanagawa 230-0045, Japan.
Int J Biol Macromol. 2021 Apr 30;177:337-350. doi: 10.1016/j.ijbiomac.2021.02.069. Epub 2021 Feb 11.
This study evaluated the inhibitory potential of various beta-lactamase inhibitors such as mechanism-based inhibitors (MBIs), carbapenems, monobactam, and non-beta-lactam inhibitors against Bla1, a class-A beta-lactamase encoded by Bacillus anthracis. The binding potential of different inhibitors was estimated using competitive kinetic assay, isothermal titration calorimetry, and Biolayer interferometry. We observed that tazobactam has better inhibition among other MBIs with a characteristics inhibition dissociation constant of 0.51 ± 0.13 μM. Avibactam was also identified as good inhibitor with an inhibition efficiency of 0.6 ± 0.04 μM. All the MBIs (K = 1.90E-04 M, 2.05E-05 M, 3.55E-04 M for clavulanate, sulbactam and tazobactam) showed significantly better binding potential than carbapenems (K = 1.02E-03 M, 2.74E-03 M, 1.24E-03 M for ertapenem, imipenem and biapenem respectively). Molecular dynamics simulations were carried out using Bla1-inhibitor complexes to understand the dynamics and stability. The minimum inhibitory concentration (MIC) was carried out by taking various substrates and inhibitors, and later it was followed by cell viability assay. Together, our study helps develop a proper understanding of Bla1 beta-lactamase and its interaction with inhibitory molecules. This study would facilitate comprehending the catalytic divergence of beta-lactamases and the newly emergent resistant strains, focusing on the new generation of therapeutics being less prone to antimicrobial resistance.
本研究评估了各种β-内酰胺酶抑制剂的抑制潜力,如机制抑制剂(MBIs)、碳青霉烯类、单环β-内酰胺类和非β-内酰胺类抑制剂,针对炭疽杆菌编码的 A 类β-内酰胺酶 Bla1。使用竞争动力学测定、等温滴定量热法和生物层干涉法估计了不同抑制剂的结合潜力。我们观察到他唑巴坦在其他 MBIs 中具有更好的抑制作用,其特征抑制解离常数为 0.51 ± 0.13 μM。阿维巴坦也被鉴定为具有良好抑制作用的抑制剂,抑制效率为 0.6 ± 0.04 μM。所有 MBIs(克拉维酸、舒巴坦和他唑巴坦的 K 值分别为 1.90E-04 M、2.05E-05 M 和 3.55E-04 M)显示出比碳青霉烯类(厄他培南、亚胺培南和比阿培南的 K 值分别为 1.02E-03 M、2.74E-03 M 和 1.24E-03 M)更好的结合潜力。使用 Bla1-抑制剂复合物进行分子动力学模拟,以了解动力学和稳定性。通过使用各种底物和抑制剂进行最低抑菌浓度(MIC)测定,随后进行细胞活力测定。总之,我们的研究有助于对 Bla1 内酰胺酶及其与抑制分子的相互作用有一个正确的认识。这项研究将有助于理解β-内酰胺酶的催化差异和新出现的耐药菌株,重点是新一代治疗药物不易产生抗微生物耐药性。