Dipartimento di Fisica, Università di Napoli Federico II, and INFN Napoli, Complesso Universitario di Monte Sant'Angelo, Naples, Italy.
Berlin Institute for Medical Systems Biology, Max-Delbrück Centre (MDC) for Molecular Medicine, Berlin, Germany.
FEBS J. 2022 Mar;289(5):1180-1190. doi: 10.1111/febs.15762. Epub 2021 Feb 22.
In higher eukaryotes, chromosomes have a complex three-dimensional (3D) conformation in the cell nucleus serving vital functional purposes, yet their folding principles remain poorly understood at the single-molecule level. Here, we summarize recent approaches from polymer physics to comprehend the physical mechanisms underlying chromatin architecture. In particular, we focus on two models that have been supported by recent, growing experimental evidence, the Loop Extrusion model and the Strings&Binders phase separation model. We discuss their key ingredients, how they compare to experimental data and some insight they provide on chromatin architecture and gene regulation. Progress in that research field are opening the possibility to predict how genomic mutations alter the network of contacts between genes and their regulators and how that is linked to genetic diseases, such as congenital disorders and cancer.
在高等真核生物中,染色体在细胞核中具有复杂的三维(3D)构象,这些构象对其功能至关重要,但在单分子水平上,其折叠原理仍知之甚少。在这里,我们总结了近年来从高分子物理角度理解染色质结构基础物理机制的方法。特别地,我们重点介绍了两种模型,它们得到了最近越来越多的实验证据的支持,即环挤出模型和串珠-黏合剂相分离模型。我们讨论了它们的关键成分,以及它们与实验数据的比较,并探讨了它们对染色质结构和基因调控的一些见解。该研究领域的进展为预测基因组突变如何改变基因与其调控因子之间的接触网络以及如何与遗传疾病(如先天性疾病和癌症)相关提供了可能性。