Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.
Institute of Mechanical Engineering and Material Technology, Department of Innovative Technology, SUPSI, Manno, Switzerland and Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
J Mater Chem B. 2021 Mar 4;9(8):2092-2106. doi: 10.1039/d0tb02372h.
The lack of accurate and easily applicable methods for the diagnosis of liver fibrosis, a disease characterized by an accumulation of the extracellular matrix released by activated hepatic stellate cells (HSCs), has been a major limitation for the clinical management of liver diseases. The identification of biomarkers specific to liver microstructure alterations, combined with a non-invasive optical imaging modality, could guide clinicians towards a therapeutic strategy. In this study, structural information of the insulin-like growth factor 2 receptor (IGF2R), an overexpressed protein on activated HSCs, was used for in silico screening of novel IGF2R-specific peptide ligands. Molecular dynamics simulations, followed by computational alanine scanning of the IGF2R/IGF2 complex, led to the identification of a putative peptide sequence containing the most relevant amino acids for the receptor-ligand interaction (IGF2 E12-C21). The Residue Scan tool, implemented in the MOE software, was then used to optimize the binding affinity of this sequence by amino acid mutations. The designed peptides and their associated scrambled sequences were fluorescently labelled and their binding affinity to LX-2 cells (model for activated human HSCs) was tested using flow cytometry and confocal microscopy. In vitro binding was verified for all sequences (KD ≤ 13.2 μM). With respect to the putative binding sequence, most mutations led to an increased affinity. All sequences have shown superior binding compared to their associated scrambled sequences. Using HPLC, all peptides were tested in vitro for their proteolytic resistance and showed a stability of ≥60% intact after 24 h at 37 °C in 50% v/v FBS. In view of their prospective diagnostic application, a comparison of binding affinity was performed in perpetuated and quiescent-like LX-2 cells. Furthermore, the IGF2R expression for different cell phenotypes was analysed by a quantitative mass spectrometric approach. Our peptides showed increased binding to the perpetuated cell state, indicating their good selectivity for the diagnostically relevant phenotype. In summary, the increased binding affinity of our peptides towards perpetuated LX-2 cells, as well as the satisfactory proteolytic stability, proves that the in silico designed sequences offer a new potential strategy for the targeting of hepatic fibrosis.
缺乏准确且易于应用的方法来诊断肝纤维化一直是肝脏疾病临床管理的主要限制,肝纤维化是一种以活化的肝星状细胞(HSCs)释放的细胞外基质积累为特征的疾病。鉴定与肝组织学改变特异性相关的生物标志物,结合非侵入性的光学成像方式,可以为临床医生提供治疗策略。在这项研究中,胰岛素样生长因子 2 受体(IGF2R)的结构信息被用于针对活化的 HSCs 过度表达的蛋白进行新型 IGF2R 特异性肽配体的计算机筛选。分子动力学模拟,以及对 IGF2R/IGF2 复合物进行计算丙氨酸扫描,导致鉴定出一种包含与受体-配体相互作用最相关氨基酸的假定肽序列(IGF2 E12-C21)。然后,使用 MOE 软件中的 Residue Scan 工具通过氨基酸突变来优化该序列的结合亲和力。设计的肽及其相关的乱序序列被荧光标记,并使用流式细胞术和共聚焦显微镜测试它们与 LX-2 细胞(活化的人 HSCs 模型)的结合亲和力。所有序列的体外结合均得到验证(KD≤13.2 μM)。与假定的结合序列相比,大多数突变导致亲和力增加。与相应的乱序序列相比,所有序列均显示出更好的结合。使用 HPLC,所有肽都在体外进行了蛋白酶抗性测试,在 37°C 下在 50%v/v FBS 中孵育 24 小时后,其完整性稳定性≥60%。鉴于它们的预期诊断应用,在持续和静止样 LX-2 细胞中进行了结合亲和力的比较。此外,通过定量质谱分析方法分析了不同细胞表型的 IGF2R 表达。我们的肽显示出与持续细胞状态的结合增加,表明它们对诊断相关表型具有良好的选择性。总的来说,我们的肽对持续 LX-2 细胞的结合亲和力增加以及令人满意的蛋白酶稳定性证明,计算机设计的序列为靶向肝纤维化提供了一种新的潜在策略。