Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road,Cambridge CB2 1EW, United Kingdom.
Division of Chemistry, NRCN, P.O. Box 9001, Beer-Sheva 84190, Israel.
J Chem Inf Model. 2021 Mar 22;61(3):1204-1214. doi: 10.1021/acs.jcim.0c01292. Epub 2021 Feb 22.
Iron-sulfur clusters serve unique roles in biochemistry, geochemistry, and renewable energy technologies. However, a full theoretical understanding of their structures and properties is still lacking. To facilitate large-scale reactive molecular dynamics simulations of iron-sulfur clusters in aqueous environments, a ReaxFF reactive force field is developed, based on an extensive set of quantum chemical calculations. This force field compares favorably with the reference calculations on gas-phase species and significantly improves on a previous ReaxFF parametrization. We employ the new potential to study the stability and reactivity of iron-sulfur clusters in explicit water with constant-temperature reactive molecular dynamics. The aqueous species exhibit a dynamic, temperature-dependent behavior, in good agreement with previous much more costly ab initio simulations.
铁硫簇在生物化学、地球化学和可再生能源技术中具有独特的作用。然而,对其结构和性质的全面理论理解仍然缺乏。为了促进铁硫簇在水相环境中的大规模反应分子动力学模拟,基于大量量子化学计算,开发了一个 ReaxFF 反应力场。该力场与气相物种的参考计算相比具有很好的可比性,并显著优于以前的 ReaxFF 参数化。我们使用新的势能来研究铁硫簇在恒定温度反应分子动力学条件下的稳定性和反应性。水相物种表现出动态的、与温度相关的行为,与以前更昂贵的从头算模拟非常吻合。