• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

从淡水池塘分离的sp. 菌株DAIF2的全基因组序列

Complete Genome Sequence of sp. Strain DAIF2, Isolated from a Freshwater Pond.

作者信息

Hollensteiner Jacqueline, Friedrich Ines, Hollstein Lucas, Lamping Jan-Philipp, Wolf Kalina, Liesegang Heiko, Poehlein Anja, Hertel Robert, Daniel Rolf

机构信息

Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany.

FG Synthetic Microbiology, Institute of Biotechnology, BTU Cottbus-Senftenberg, Senftenberg, Germany.

出版信息

Microbiol Resour Announc. 2021 Feb 25;10(8):e00003-21. doi: 10.1128/MRA.00003-21.

DOI:10.1128/MRA.00003-21
PMID:33632852
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7909077/
Abstract

sp. strain DAIF2 was isolated from a eutrophic freshwater pond. The genome consists of a single chromosome (6,010,585 bp) with a GC content of 69.3%. The whole-genome-based phylogeny of DAIF2 revealed a closest relation to the genus .

摘要

菌株DAIF2从一个富营养化淡水池塘中分离得到。其基因组由一条单一染色体(6,010,585 bp)组成,GC含量为69.3%。基于全基因组的DAIF2系统发育分析表明它与该属关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8787/7909077/a0b29edf25c8/MRA.00003-21-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8787/7909077/a0b29edf25c8/MRA.00003-21-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8787/7909077/a0b29edf25c8/MRA.00003-21-f0001.jpg

相似文献

1
Complete Genome Sequence of sp. Strain DAIF2, Isolated from a Freshwater Pond.从淡水池塘分离的sp. 菌株DAIF2的全基因组序列
Microbiol Resour Announc. 2021 Feb 25;10(8):e00003-21. doi: 10.1128/MRA.00003-21.
2
Kinneretia asaccharophila gen. nov., sp. nov., isolated from a freshwater lake, a member of the Rubrivivax branch of the family Comamonadaceae.无淀粉海单胞菌属,新属,新种,从一个淡水湖中分离出来,是红蝽科的 Rubrivivax 分支的一个成员。
Int J Syst Evol Microbiol. 2010 Apr;60(Pt 4):809-814. doi: 10.1099/ijs.0.011478-0. Epub 2009 Aug 6.
3
Complete Genome Sequences of sp. Strain XES5, sp. Strain XGS7, and sp. Strain XCS3, Isolated from Xenopus laevis Skin.从非洲爪蟾皮肤分离出的XES5菌株、XGS7菌株和XCS3菌株的全基因组序列
Microbiol Resour Announc. 2021 Dec 16;10(50):e0105021. doi: 10.1128/MRA.01050-21.
4
Draft Genome Sequence of Acinetobacter sp. Strain YZS-X1-1, a Denitrifying Bacterium Isolated from Freshwater Pond Sludge in China.不动杆菌属菌株YZS-X1-1的基因组草图序列,该菌株是从中国淡水池塘污泥中分离出的一种反硝化细菌。
Genome Announc. 2015 Feb 12;3(1):e01579-14. doi: 10.1128/genomeA.01579-14.
5
gen. nov., sp. nov. and sp. nov., representing a new genus of widespread freshwater bacteria.新属、新种及新种,代表一种广泛分布的淡水细菌新属。
Int J Syst Evol Microbiol. 2019 Sep;69(9):2739-2749. doi: 10.1099/ijsem.0.003554.
6
Aquincola rivuli sp. nov., isolated from a freshwater stream.新种溪流阿奎诺菌,从一条淡水溪流中分离得到。
Int J Syst Evol Microbiol. 2019 Aug;69(8):2226-2232. doi: 10.1099/ijsem.0.003429. Epub 2019 May 13.
7
Whole-Genome Sequence of sp. Strain TEGAF015, Isolated from a Shallow Eutrophic Freshwater Lake in Japan.从日本一个浅水富营养淡水湖分离出的菌株TEGAF015的全基因组序列
Microbiol Resour Announc. 2022 Nov 17;11(11):e0088222. doi: 10.1128/mra.00882-22. Epub 2022 Oct 17.
8
gen. nov., sp. nov. and sp. nov., isolated from freshwater habitats.新属,新种和新种,从淡水生境中分离得到。
Int J Syst Evol Microbiol. 2020 Mar;70(3):1630-1638. doi: 10.1099/ijsem.0.003947.
9
Methylibium aquaticum sp. nov., a betaproteobacterium isolated from a eutrophic freshwater pond.水生甲基杆菌新种,一种从富营养淡水池塘分离出的β-变形菌。
Int J Syst Evol Microbiol. 2007 Sep;57(Pt 9):2125-2128. doi: 10.1099/ijs.0.65179-0.
10
Parvibium lacunae gen. nov., sp. nov., a new member of the family Alcaligenaceae isolated from a freshwater pond.细小腔菌属,新属,新种,从淡水池塘分离出的产碱菌科新成员。
Int J Syst Evol Microbiol. 2018 Apr;68(4):1291-1299. doi: 10.1099/ijsem.0.002667. Epub 2018 Mar 2.

引用本文的文献

1
Complete Genome Sequences of sp. Strain XES5, sp. Strain XGS7, and sp. Strain XCS3, Isolated from Xenopus laevis Skin.从非洲爪蟾皮肤分离出的XES5菌株、XGS7菌株和XCS3菌株的全基因组序列
Microbiol Resour Announc. 2021 Dec 16;10(50):e0105021. doi: 10.1128/MRA.01050-21.

本文引用的文献

1
First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis.金黄杆菌 EIF1 和 EIF2 的完整基因组序列及其比较基因组分析。
Genome Biol Evol. 2020 Oct 1;12(10):1782-1788. doi: 10.1093/gbe/evaa148.
2
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台,用于最先进的基于基因组的分类学。
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
3
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp:一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
4
Minimap2: pairwise alignment for nucleotide sequences.Minimap2:核苷酸序列的两两比对。
Bioinformatics. 2018 Sep 15;34(18):3094-3100. doi: 10.1093/bioinformatics/bty191.
5
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
6
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.Qualimap 2:用于高通量测序数据的高级多样本质量控制
Bioinformatics. 2016 Jan 15;32(2):292-4. doi: 10.1093/bioinformatics/btv566. Epub 2015 Oct 1.
8
FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program.FastME 2.0:一个全面、准确、快速的基于距离的系统发育推断程序。
Mol Biol Evol. 2015 Oct;32(10):2798-800. doi: 10.1093/molbev/msv150. Epub 2015 Jun 30.
9
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
10
Fast gapped-read alignment with Bowtie 2.快速缺口读对准与 Bowtie 2。
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.