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采用全外显子组测序技术对疑似原发性纤毛运动障碍的韩国成人非结核分枝杆菌患者进行基因分析。

Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing.

机构信息

Department of Laboratory Medicine, Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine, Seoul, Korea.

GC Genome, Yongin, Korea.

出版信息

Yonsei Med J. 2021 Mar;62(3):224-230. doi: 10.3349/ymj.2021.62.3.224.

Abstract

PURPOSE

Nontuberculous mycobacteria (NTM) is ubiquitous in the environment, but NTM lung disease (NTM-LD) is uncommon. Since exposure to NTM is inevitable, patients who develop NTM-LD are likely to have specific susceptibility factors, such as primary ciliary dyskinesia (PCD). PCD is a genetically heterogeneous disorder of motile cilia and is characterized by chronic respiratory tract infection, organ laterality defect, and infertility. In this study, we performed whole exome sequencing (WES) and investigated the genetic characteristics of adult NTM patients with suspected PCD.

MATERIALS AND METHODS

WES was performed in 13 NTM-LD patients who were suspected of having PCD by clinical symptoms and/or ultrastructural ciliary defect observed by transmission electron microscopy. A total of 45 PCD-causing genes, 23 PCD-candidate genes, and 990 ciliome genes were analyzed.

RESULTS

Four patients were found to have biallelic loss-of-function (LoF) variants in the following PCD-causing genes: , , , and . In four other patients, only one LoF variant was identified, while the remaining five patients did not have any LoF variants.

CONCLUSION

At least 30.8% of NTM-LD patients who were suspected of having PCD had biallelic LoF variants, and an additional 30.8% of patients had one LoF variant. Therefore, PCD should be considered in patients with NTM-LD with symptoms or signs suspicious of PCD.

摘要

目的

非结核分枝杆菌(NTM)在环境中无处不在,但 NTM 肺病(NTM-LD)并不常见。由于接触 NTM 是不可避免的,因此患有 NTM-LD 的患者可能具有特定的易感性因素,例如原发性纤毛运动障碍(PCD)。PCD 是一种运动纤毛的遗传异质性疾病,其特征是慢性呼吸道感染、器官偏侧性缺陷和不孕。在本研究中,我们进行了全外显子组测序(WES),并研究了疑似 PCD 的成年 NTM 患者的遗传特征。

材料和方法

对 13 名疑似 PCD 的 NTM-LD 患者进行了 WES,这些患者通过透射电子显微镜观察到的临床症状和/或超微结构纤毛缺陷被怀疑患有 PCD。分析了 45 个 PCD 致病基因、23 个 PCD 候选基因和 990 个纤毛组基因。

结果

在以下 PCD 致病基因中发现了 4 名患者的双等位基因功能丧失(LoF)变异: 、 、 、和 。在另外 4 名患者中,仅发现了一个 LoF 变异,而其余 5 名患者没有任何 LoF 变异。

结论

至少有 30.8%的疑似 PCD 的 NTM-LD 患者存在双等位基因 LoF 变异,另有 30.8%的患者存在一个 LoF 变异。因此,对于有 PCD 症状或体征可疑的 NTM-LD 患者,应考虑 PCD。

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