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完整线粒体基因组分析及其在(啮齿目:仓鼠科:田鼠亚科)系统发育中的应用。

Analysis of complete mitochondrial genome and its application to phylogeny of (Rodentia: Cricetidae: Arvicolinae).

作者信息

Yu Pei, Kong Lingming, Li Yiqiao, Cong Haiyan, Li Yuchun

机构信息

Marine College, Shandong University, Weihai, China.

Institute of Ecology and Biodiversity, Shandong University, Jinan, China.

出版信息

Mitochondrial DNA B Resour. 2016 Apr 19;1(1):343-344. doi: 10.1080/23802359.2016.1172275.

DOI:10.1080/23802359.2016.1172275
PMID:33644377
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7871860/
Abstract

In this study, the complete mitochondrial genome of Inez's red-backed vole was sequenced and analyzed as the first species in genus . The complete mitochondrial genome of is 16,354 bp in length and shows a typical vertebrate pattern with 13 PCGs, 22 tRNAs, 2 rRNAs and 2 non-coding regions. To gain a clear phylogenetic position of , a ML phylogenetic tree was constructed based on 12 PCGs on H-strand from 23 rodent species except for gene which is on L-strand. As a result, is clustered with genera and , showing their close phylogenetic relationships. The present study may facilitate further investigation of the taxonomic studies and phylogenetic analyses of the genus

摘要

在本研究中,对伊内兹红背田鼠的完整线粒体基因组进行了测序和分析,它是该属的首个物种。该物种的完整线粒体基因组长度为16354 bp,呈现出典型的脊椎动物模式,包含13个蛋白质编码基因(PCGs)、22个转运RNA(tRNAs)、2个核糖体RNA(rRNAs)和2个非编码区。为了明确该物种的系统发育位置,基于23种啮齿动物H链上的12个PCGs构建了最大似然法(ML)系统发育树,其中 基因位于L链。结果表明,该物种与 属和 属聚类在一起,显示出它们密切的系统发育关系。本研究可能有助于进一步开展该属的分类学研究和系统发育分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef92/7871860/d7435cf87e0d/TMDN_A_1172275_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef92/7871860/d7435cf87e0d/TMDN_A_1172275_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef92/7871860/d7435cf87e0d/TMDN_A_1172275_F0001_B.jpg

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