MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Guangdong Metabolic Diseases Research Center of Integrated Chinese and Western Medicine, Guangdong Pharmaceutical University, Guangzhou 510006, China.
Genomics Proteomics Bioinformatics. 2022 Aug;20(4):657-669. doi: 10.1016/j.gpb.2019.12.002. Epub 2021 Feb 27.
Clear cell renal cell carcinoma (ccRCC) is a frequently occurring renal cancer. The Von Hippel-Lindau disease tumor suppressor VHL, a known tumor suppressor gene, is frequently mutated in about 50% of patients with ccRCC. However, it is unclear whether VHL influences the progression of ccRCC tumors expressing wild-type VHL. In the present study, we found that higher expression of VHL was correlated with the better disease-free survival (DFS) in ccRCC patients using The Cancer Genome Atlas (TCGA) datasets. We revealed that VHL overexpression in ccRCC cells inhibited epithelial-mesenchymal transition (EMT), sterol regulatory element-binding protein 1 (SREBP1)-regulated triglyceride synthesis, and cell proliferation. Proteomic analysis provided us a global view that VHL regulated four biological processes, including metabolism, immune regulation, apoptosis, and cell movement. Importantly, we found that VHL overexpression led to up-regulated expression of proteins associated with antigen processing and interferon-responsive proteins, thus rendering ccRCC cells more sensitive to interferon treatment. We defined an interferon-responsive signature (IRS) composed of ten interferon-responsive proteins, whose mRNA expression levels were positively correlated with DFS in ccRCC patients. Taken together, our results propose that the subset of ccRCC patients with high VHL expression benefit from immunotherapy.
透明细胞肾细胞癌(ccRCC)是一种常见的肾癌。von Hippel-Lindau 病肿瘤抑制因子 VHL 是一种已知的肿瘤抑制基因,在约 50%的 ccRCC 患者中经常发生突变。然而,目前尚不清楚 VHL 是否会影响表达野生型 VHL 的 ccRCC 肿瘤的进展。在本研究中,我们使用癌症基因组图谱(TCGA)数据集发现,VHL 高表达与 ccRCC 患者无病生存(DFS)更好相关。我们揭示了 ccRCC 细胞中 VHL 的过表达抑制了上皮间质转化(EMT)、固醇调节元件结合蛋白 1(SREBP1)调节的甘油三酯合成和细胞增殖。蛋白质组学分析为我们提供了一个全局视图,表明 VHL 调节了四个生物学过程,包括代谢、免疫调节、细胞凋亡和细胞运动。重要的是,我们发现 VHL 的过表达导致与抗原加工和干扰素反应蛋白相关的蛋白表达上调,从而使 ccRCC 细胞对干扰素治疗更敏感。我们定义了一个由十个干扰素反应蛋白组成的干扰素反应特征(IRS),其 mRNA 表达水平与 ccRCC 患者的 DFS 呈正相关。总之,我们的研究结果表明,VHL 高表达的 ccRCC 患者亚组可能受益于免疫治疗。