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新型杂环酰胺类抑制剂的发现:一种以可溶性环氧化物水解酶为靶点的综合方法。

Discovery of novel heterocyclic amide-based inhibitors: an integrative approach to targeting soluble epoxide hydrolase.

机构信息

Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg, South Africa.

Department of Pharmaceutical Chemistry, School of Pharmacy, Shahid Beheshti University of Medical Sciences, Tehran, Iran.

出版信息

J Biomol Struct Dyn. 2022 Sep;40(15):7114-7128. doi: 10.1080/07391102.2021.1894987. Epub 2021 Mar 2.

DOI:10.1080/07391102.2021.1894987
PMID:33650467
Abstract

Inhibition of soluble epoxide hydrolase (sEH) is considered as an emerging druggable target to reduce blood pressure, improve insulin sensitivity, and decrease inflammation. Despite the availability of different classes of sEH small molecule inhibitors for the potential treatment of hypertension, only a few candidates have reached clinical trials, making the optimal control of blood pressure presently unattainable. This necessity motivated us to explore a series of novel quinazoline-4(3)-one and 4,6-disubstituted pyridin-2(1)-one derivatives targeting sEH enzyme. Herein, comprehensive computational investigations were performed to probe the inhibition efficacy of these potent compounds in terms of inhibitor-enzyme interactions against sEH. In this study, the 39 in-house with a focused library comprising 39 in-house synthesized compounds were selected. The structure-based pharmacophore modeling was developed based on the crystal structure of sEH with its co-crystallized biologically active inhibitor. The generated hypotheses were applied for virtual screening-based PHASE fitness scores. Docking-based virtual screening workflows were used to generate lead compounds using HTVS, SP and XP based GLIDE G-score values. The candidate leads were filtered using ADMET pharmacological and physicochemical properties screening. A 100-ns of molecular dynamics simulations with Molecular dynamics simulations (100 ns) were performed to explore the binding affinities of the considered compounds. Our study identified four best candidates from quinazoline-4(3H)-one derivatives, which indicated that a quinazolinone ring serves as a suitable scaffold to develop novel small molecule sEH inhibitors.

摘要

抑制可溶性环氧化物水解酶(sEH)被认为是降低血压、提高胰岛素敏感性和减少炎症的新兴药物靶点。尽管有不同类别的 sEH 小分子抑制剂可用于治疗高血压,但只有少数候选药物进入临床试验,使得目前无法实现血压的最佳控制。这一需求促使我们探索了一系列针对 sEH 酶的新型喹唑啉-4(3)-酮和 4,6-二取代吡啶-2(1)-酮衍生物。在此,我们进行了全面的计算研究,以探究这些有效化合物在抑制 sEH 方面的抑制效果,从抑制剂-酶相互作用的角度进行研究。在本研究中,选择了 39 个内部化合物库和 39 个内部合成化合物。基于 sEH 与其共结晶的生物活性抑制剂的晶体结构,开发了基于结构的药效团模型。生成的假设被应用于基于虚拟筛选的 PHASE 拟合分数。基于 HTVS、SP 和 XP 的 GLIDE G 评分,使用 docking-based virtual screening 工作流程生成先导化合物。使用 ADMET 药理学和物理化学性质筛选对候选物进行过滤。对考虑的化合物进行了 100ns 的分子动力学模拟,以探索其结合亲和力。我们的研究从喹唑啉-4(3H)-酮衍生物中确定了四个最佳候选物,这表明喹唑啉酮环是开发新型小分子 sEH 抑制剂的合适支架。

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