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渗透物与盐桥阴离子的相互作用强度决定了盐桥的稳定性。

Interaction strength of osmolytes with the anion of a salt-bridge determines its stability.

机构信息

A Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri, Bhopal, MP 462066, India.

出版信息

Phys Chem Chem Phys. 2021 Mar 11;23(9):5527-5539. doi: 10.1039/d0cp05378c.

Abstract

In order to understand the role of osmolytes in regulating physicochemical behavior of proteins, we investigated the influence of protein destabilizing (urea and guanidinium chloride) and stabilizing osmolytes (TMAO, glycerol, and betaine) on a model salt-bridge (SB) formed between structural analogues of arginine and glutamate/aspartate sidechains in a solvent continuum using first-principles quantum chemical calculations based on DFT and MP2 methods. The binding strength of the osmolyte with the SB is found to be in the order of betaine > TMAO > Gdm+ > glycerol > urea. The osmolytes (TMAO and betaine) that preferentially bind to the SB cation have a marginal influence on SB stability. Also, pure π-π stacking interaction between Gdm+ and the SB cation plays an insignificant role in destabilizing the SB. In fact, the interaction strength of osmolytes with the SB anion mainly determines the stability of SB. For instance, a competition between Gdm+ and the SB cation to bind with the SB anion is responsible for instability and subsequent dissociation of the SB. The competition provided by other osmolytes is too weak to break the SB. Exploiting this information, we designed three structural derivatives of Gdm+, all having a stronger interaction with SB anion, and thereby show a stronger SB dissociation potential. Furthermore, we find an excellent linear anti-correlation between SB interaction energy and the energy of interaction between osmolyte and the SB anion, which suggests that by knowing only the strength of osmolyteacetate interaction, one can predict the influence of osmolytes on the salt-bridge instability. This information is useful in fine-tuning the SB dissociation power of Gdm+, which has a practical significance in obtaining the mechanistic insight into the influence of GdmCl on protein stability. Our results also provide a basis for understanding the chemistry of other ion-pairs formed between a cationic hydrogen donor and an anionic acceptor.

摘要

为了理解渗透物在调节蛋白质理化行为中的作用,我们研究了蛋白质去稳定化(尿素和盐酸胍)和稳定化渗透物(TMAO、甘油和甜菜碱)对溶剂连续体中结构类似物精氨酸和谷氨酸/天冬氨酸侧链之间形成的盐桥(SB)的影响,使用基于 DFT 和 MP2 方法的第一性原理量子化学计算。发现渗透物与 SB 的结合强度顺序为甜菜碱>TMAO>Gdm+>甘油>尿素。优先与 SB 阳离子结合的渗透物(TMAO 和甜菜碱)对 SB 稳定性的影响不大。此外,Gdm+与 SB 阳离子之间的纯 π-π 堆积相互作用在使 SB 不稳定方面作用不大。事实上,渗透物与 SB 阴离子的相互作用强度主要决定 SB 的稳定性。例如,Gdm+与 SB 阳离子竞争与 SB 阴离子结合是 SB 不稳定和随后解离的原因。其他渗透物提供的竞争太弱,无法破坏 SB。利用这一信息,我们设计了三种 Gdm+的结构衍生物,它们都与 SB 阴离子有更强的相互作用,从而表现出更强的 SB 解离潜能。此外,我们发现 SB 相互作用能与渗透物与 SB 阴离子相互作用能之间存在极好的线性反相关关系,这表明仅知道渗透物与 SB 阴离子相互作用的强度,就可以预测渗透物对盐桥不稳定性的影响。这一信息有助于精细调整 Gdm+的 SB 解离能力,在获得 GdmCl 对蛋白质稳定性影响的机制见解方面具有实际意义。我们的研究结果也为理解阳离子供体与阴离子受体之间形成的其他离子对的化学性质提供了依据。

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