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应用于人类血红蛋白与氧气结合的三态组合开关模型。

Three-state combinatorial switch models as applied to the binding of oxygen by human hemoglobin.

作者信息

Straume M, Johnson M L

机构信息

Department of Pharmacology, University of Virginia School of Medicine, Charlottesville 22908.

出版信息

Biochemistry. 1988 Feb 23;27(4):1302-10. doi: 10.1021/bi00404a032.

Abstract

We have generated a series of all 6561 unique, discrete three-state combinatorial switch models to describe the partitioning of the cooperative oxygen-binding free change among the 10 variously ligated forms of human hemoglobin tetramers. These models were inspired by the experimental observation of Smith and Ackers that the cooperative free energy of the intersubunit contact regions of the 10 possible ligated forms of human hemoglobin tetramers can be represented by a particular distribution of three distinct energy levels [Smith, F. R., & Ackers, G. K. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 5347-5351]. A statistical thermodynamic formulation accounting for both dimer-tetramer equilibria and ligand binding properties of hemoglobin solutions as a function of oxygen and protein concentrations was utilized to exhaustively test these thermodynamic models. In this series of models each of the 10 ligated forms of the hemoglobin tetramer can exist in one, and only one, of three possible energy levels; i.e., each ligated form was assumed to be associated with a discrete energy state. This series of models includes all possible ways that the 10 ligation states of hemoglobin can be distributed into three distinct cooperative energy levels. The mathematical models, as presented here, do not permit equilibria between energy states to exist for any of the 10 unique ligated forms of hemoglobin tetramers. These models were analyzed by nonlinear least-squares estimation of the free energy parameters characteristic of this statistical thermodynamic development.(ABSTRACT TRUNCATED AT 250 WORDS)

摘要

我们生成了一系列共6561个独特的、离散的三态组合开关模型,以描述人类血红蛋白四聚体10种不同连接形式之间协同氧结合自由变化的分配情况。这些模型的灵感来源于史密斯和阿克斯的实验观察结果,即人类血红蛋白四聚体10种可能连接形式的亚基间接触区域的协同自由能可以由三种不同能级的特定分布来表示[史密斯,F. R.,& 阿克斯,G. K.(1985年)《美国国家科学院院刊》82, 5347 - 5351]。利用一种统计热力学公式,该公式考虑了二聚体 - 四聚体平衡以及血红蛋白溶液作为氧和蛋白质浓度函数的配体结合特性,来详尽地测试这些热力学模型。在这一系列模型中,血红蛋白四聚体的10种连接形式中的每一种都只能存在于三种可能能级中的一种,且仅一种;也就是说,每种连接形式都被假定与一个离散的能量状态相关联。这一系列模型涵盖了血红蛋白的10种连接状态分配到三个不同协同能级的所有可能方式。此处给出的数学模型不允许血红蛋白四聚体10种独特连接形式中的任何一种在能量状态之间存在平衡。通过对这种统计热力学发展所特有的自由能参数进行非线性最小二乘估计来分析这些模型。(摘要截断于250字)

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