Opel-Reading Helen K, Mortuza Roman, Krause Kurt L
Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Bio Protoc. 2019 Jan 5;9(1):e3135. doi: 10.21769/BioProtoc.3135.
D-amino acid transaminase (D-AAT) is able to synthesize both D-glutamate and D-alanine, according to the following reaction: D-alanine + α-ketoglutarate ⇌ D-glutamate + pyruvate. These two D-amino acids are essential components of the peptidoglycan layer of bacteria. In our recently published work, MSMEG_5795 from was identified as having D-amino acid transaminase (D-AAT) activity, although it has primarily been annotated as 4-amino-4-deoxychorismate lyase (ADCL). To unequivocally demonstrate D-AAT activity from MSMEG_5795 protein two coupled enzyme assays were performed in series. First, D-alanine and α-ketoglutarate were converted to D-glutamate and pyruvate by MSMEG_5795 using the D-AAT assay. Next, the products of this reaction, following removal of all protein, were used as input into an assay for glutamate racemase in which D-glutamate is converted to L-glutamate by glutamate racemase (Gallo and Knowles, 1993; Poen , 2016 ). As the only source of D-glutamate in this assay would be from the reaction of D-alanine with MSMEG_5795, positive results from this assay would confirm the D-AAT activity of MSMEG_5795 and of any enzyme tested in this manner.
D-氨基酸转氨酶(D-AAT)能够根据以下反应合成D-谷氨酸和D-丙氨酸:D-丙氨酸 + α-酮戊二酸⇌D-谷氨酸 + 丙酮酸。这两种D-氨基酸是细菌肽聚糖层的重要组成部分。在我们最近发表的工作中,来自[具体来源未给出]的MSMEG_5795被鉴定为具有D-氨基酸转氨酶(D-AAT)活性,尽管它主要被注释为4-氨基-4-脱氧分支酸裂解酶(ADCL)。为了明确证明MSMEG_5795蛋白的D-AAT活性,我们连续进行了两种偶联酶测定。首先,使用D-AAT测定法,MSMEG_5795将D-丙氨酸和α-酮戊二酸转化为D-谷氨酸和丙酮酸。接下来,在去除所有蛋白质后,该反应的产物被用作谷氨酸消旋酶测定的输入物,在该测定中,谷氨酸消旋酶(加洛和诺尔斯,1993年;波恩,2016年)将D-谷氨酸转化为L-谷氨酸。由于该测定中D-谷氨酸的唯一来源将是D-丙氨酸与MSMEG_5795反应产生的,该测定的阳性结果将证实MSMEG_5795以及以这种方式测试的任何酶的D-AAT活性。