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利用动物模型中的系谱关系分析 Dahlem Red 鸡生长和生产性状的(协)方差分量和估计育种值。

Analysis of (co) variance components and estimation of breeding value of growth and production traits in Dahlem Red chicken using pedigree relationship in an animal model.

机构信息

ICAR-Directorate of Poultry Research, Rajendranagar, Hyderabad, Telangana, India.

出版信息

PLoS One. 2021 Mar 3;16(3):e0247779. doi: 10.1371/journal.pone.0247779. eCollection 2021.

Abstract

Variance and covariance components of growth and production traits were analyzed employing REML animal model to assess the Dahlem Red (PD-3) chicken population for direct additive genetic, maternal effects and to estimate the estimated breeding value (EBV), genetic parameters, genetic trends and rate of inbreeding (ΔF) utilizing seven generation's data. The generation and hatch had significant (P≤0.01) effect on the body weight at 0 day (BW0), 2 (BW2), 4 (BW4) and 6 weeks (BW6) and shank length at six weeks of age (SL6). The average least squares means (LSM) for BW6 and SL6 were 273.93±0.62 g and 53.97±0.05 mm, respectively. All the production traits were significantly (P≤0.01) influenced by generation and hatch. The average LSM for age at sexual maturity (ASM), egg production up to 40 weeks (EP40) and egg mass up to 40 weeks (EM40) were 168.82±0.25 d, 72.60±0.41 eggs and 4.21±0.07 kg, respectively. Model 5 with additive direct, maternal genetic, maternal permanent environmental and residual variance components was the best for BW0, BW2 and BW4 based on the AIC values obtained in WOMBAT. Model 4 was the best model for BW6, SL6, ASM, EP40 and EM40 with additive direct, maternal permanent environmental and residual variance components. Maternal effects were higher during early age, decreased with age, and remained present until 20 weeks of age. The heritability (h2) estimates were low to moderate in magnitude for all the growth traits and ranged from 0.02±0.03 to 0.19±0.03. The maternal heritability was high at hatch (0.35±0.06), decreased gradually until 4th week (0.02±0.01) and ceased afterwards. The heritabilities of EP40 (0.11±0.03) and EM40 (0.12±0.04) were low. The direct additive genetic correlations (ra) between BW2, BW4, BW6 and SL6 were high and positive (P≤ 0.05). The additive genetic and maternal permanent environmental correlation between EP40 and EM40 were high and positive (P≤ 0.05). The EBV of EM40 was significant (P≤ 0.05) with 0.48 kg/generation in PD-3 chicken at the end of the seventh generation. The EBV of EP40 showed an increasing trend with a genetic gain of 1.87 eggs per generation. The average inbreeding coefficient of the population was 0.019 and average ΔF was 0.007 over the last seven generations of selection. The EBV trends for primary and associated traits showed linear trends in the desired direction and negligible inbreeding.

摘要

采用 REML 动物模型分析生长和生产性状的方差和协方差分量,以评估 Dahlem Red(PD-3)鸡群体的直接加性遗传、母性效应,并利用七代数据估计估计育种值(EBV)、遗传参数、遗传趋势和近交系数(ΔF)。世代和孵化对 0 日龄(BW0)、2 日龄(BW2)、4 日龄(BW4)和 6 周龄(BW6)的体重以及 6 周龄的胫长(SL6)有显著影响(P≤0.01)。BW6 和 SL6 的平均最小二乘均值(LSM)分别为 273.93±0.62g 和 53.97±0.05mm。所有生产性状均受世代和孵化的显著影响(P≤0.01)。性成熟(ASM)、40 周龄产蛋量(EP40)和 40 周龄蛋重(EM40)的平均 LSM 分别为 168.82±0.25d、72.60±0.41 枚和 4.21±0.07kg。基于 WOMBAT 中获得的 AIC 值,模型 5 是 BW0、BW2 和 BW4 的最佳模型,其中包含加性直接、母性遗传、母性永久环境和剩余方差分量。模型 4 是 BW6、SL6、ASM、EP40 和 EM40 的最佳模型,其中包含加性直接、母性永久环境和剩余方差分量。母性效应在早期较高,随着年龄的增长而降低,直到 20 周龄仍然存在。所有生长性状的遗传力(h2)估计值均较低,范围为 0.02±0.03 至 0.19±0.03。孵化时的母性遗传力较高(0.35±0.06),逐渐下降至第 4 周(0.02±0.01),之后停止。EP40(0.11±0.03)和 EM40(0.12±0.04)的遗传力较低。BW2、BW4、BW6 和 SL6 之间的直接加性遗传相关性(ra)较高且为正(P≤0.05)。EP40 和 EM40 之间的加性遗传和母性永久环境相关性较高且为正(P≤0.05)。PD-3 鸡在第七代末的 EM40 的 EBV 为 0.48kg/代,差异显著(P≤0.05)。EP40 的 EBV 呈上升趋势,每代遗传增益为 1.87 个。在过去的七代选择中,群体的平均近交系数为 0.019,平均 ΔF 为 0.007。初级和相关性状的 EBV 趋势呈线性变化,方向符合要求,近交程度可忽略不计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e02/7928508/24c57cfe7dda/pone.0247779.g001.jpg

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