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机器学习增强的飞行时间质谱分析

Machine-learning-enhanced time-of-flight mass spectrometry analysis.

作者信息

Wei Ye, Varanasi Rama Srinivas, Schwarz Torsten, Gomell Leonie, Zhao Huan, Larson David J, Sun Binhan, Liu Geng, Chen Hao, Raabe Dierk, Gault Baptiste

机构信息

Max-Planck-Institut für Eisenforschung, Max-Planck-Strasse 1, 40237 Düsseldorf, Germany.

CAMECA Instruments, 5470 Nobel Drive, Madison, WI 53711, USA.

出版信息

Patterns (N Y). 2021 Jan 21;2(2):100192. doi: 10.1016/j.patter.2020.100192. eCollection 2021 Feb 12.

DOI:10.1016/j.patter.2020.100192
PMID:33659909
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7892357/
Abstract

Mass spectrometry is a widespread approach used to work out what the constituents of a material are. Atoms and molecules are removed from the material and collected, and subsequently, a critical step is to infer their correct identities based on patterns formed in their mass-to-charge ratios and relative isotopic abundances. However, this identification step still mainly relies on individual users' expertise, making its standardization challenging, and hindering efficient data processing. Here, we introduce an approach that leverages modern machine learning technique to identify peak patterns in time-of-flight mass spectra within microseconds, outperforming human users without loss of accuracy. Our approach is cross-validated on mass spectra generated from different time-of-flight mass spectrometry (ToF-MS) techniques, offering the ToF-MS community an open-source, intelligent mass spectra analysis.

摘要

质谱分析法是一种广泛应用的方法,用于确定材料的组成成分。从材料中去除并收集原子和分子,随后,一个关键步骤是根据它们的质荷比和相对同位素丰度所形成的模式推断其正确的身份。然而,这一识别步骤仍然主要依赖于个人用户的专业知识,这使得其标准化具有挑战性,并阻碍了高效的数据处理。在此,我们介绍一种利用现代机器学习技术在微秒内识别飞行时间质谱图中峰模式的方法,在不损失准确性的情况下优于人类用户。我们的方法在由不同飞行时间质谱(ToF-MS)技术生成的质谱图上进行了交叉验证,为ToF-MS领域提供了一种开源的、智能的质谱分析方法。

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本文引用的文献

1
Bayesian approach to automatic mass-spectrum peak identification in atom probe tomography.
Ultramicroscopy. 2020 Aug;215:113014. doi: 10.1016/j.ultramic.2020.113014. Epub 2020 May 8.
2
SciPy 1.0: fundamental algorithms for scientific computing in Python.SciPy 1.0:Python 中的科学计算基础算法。
Nat Methods. 2020 Mar;17(3):261-272. doi: 10.1038/s41592-019-0686-2. Epub 2020 Feb 3.
3
Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry.无监督机器学习在成像质谱分析中的探索性数据分析。
Int J Mol Sci. 2022 Sep 24;23(19):11269. doi: 10.3390/ijms231911269.
Mass Spectrom Rev. 2020 May;39(3):245-291. doi: 10.1002/mas.21602. Epub 2019 Oct 11.
4
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.Prosit:基于深度学习的肽串联质谱的蛋白质组范围预测。
Nat Methods. 2019 Jun;16(6):509-518. doi: 10.1038/s41592-019-0426-7. Epub 2019 May 27.
5
Quantification Challenges for Atom Probe Tomography of Hydrogen and Deuterium in Zircaloy-4.锆合金-4中氢和氘的原子探针层析成像的定量挑战
Microsc Microanal. 2019 Apr;25(2):481-488. doi: 10.1017/S143192761801615X. Epub 2019 Mar 11.
6
Enhancing Element Identification by Expectation-Maximization Method in Atom Probe Tomography.通过期望最大化方法在原子探针断层扫描中增强元素识别
Microsc Microanal. 2019 Apr;25(2):367-377. doi: 10.1017/S1431927619000138. Epub 2019 Feb 28.
7
A near atomic-scale view at the composition of amyloid-beta fibrils by atom probe tomography.原子探针层析术获得的淀粉样β纤维组成的近原子尺度图像。
Sci Rep. 2018 Dec 4;8(1):17615. doi: 10.1038/s41598-018-36110-y.
8
Strain-Induced Asymmetric Line Segregation at Faceted Si Grain Boundaries.晶界处应变诱导的各向异性线分离。
Phys Rev Lett. 2018 Jul 6;121(1):015702. doi: 10.1103/PhysRevLett.121.015702.
9
Phase nucleation through confined spinodal fluctuations at crystal defects evidenced in Fe-Mn alloys.在铁锰合金中通过晶体缺陷限制的旋节分解涨落进行的相形核。
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10
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