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用于质谱分析的机器学习的最新进展

Recent Developments in Machine Learning for Mass Spectrometry.

作者信息

Beck Armen G, Muhoberac Matthew, Randolph Caitlin E, Beveridge Connor H, Wijewardhane Prageeth R, Kenttämaa Hilkka I, Chopra Gaurav

机构信息

Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States.

Department of Computer Science (by courtesy), Purdue University, West Lafayette, Indiana 47907, United States.

出版信息

ACS Meas Sci Au. 2024 Feb 21;4(3):233-246. doi: 10.1021/acsmeasuresciau.3c00060. eCollection 2024 Jun 19.

Abstract

Statistical analysis and modeling of mass spectrometry (MS) data have a long and rich history with several modern MS-based applications using statistical and chemometric methods. Recently, machine learning (ML) has experienced a renaissance due to advents in computational hardware and the development of new algorithms for artificial neural networks (ANN) and deep learning architectures. Moreover, recent successes of new ANN and deep learning architectures in several areas of science, engineering, and society have further strengthened the ML field. Importantly, modern ML methods and architectures have enabled new approaches for tasks related to MS that are now widely adopted in several popular MS-based subdisciplines, such as mass spectrometry imaging and proteomics. Herein, we aim to provide an introductory summary of the practical aspects of ML methodology relevant to MS. Additionally, we seek to provide an up-to-date review of the most recent developments in ML integration with MS-based techniques while also providing critical insights into the future direction of the field.

摘要

质谱(MS)数据的统计分析和建模有着悠久而丰富的历史,一些基于现代质谱的应用使用了统计和化学计量学方法。近年来,由于计算硬件的进步以及人工神经网络(ANN)和深度学习架构新算法的发展,机器学习(ML)迎来了复兴。此外,新的人工神经网络和深度学习架构最近在科学、工程和社会的多个领域取得的成功进一步巩固了机器学习领域。重要的是,现代机器学习方法和架构为与质谱相关的任务带来了新方法,这些方法现在已在几个流行的基于质谱的子学科中广泛采用,如质谱成像和蛋白质组学。在此,我们旨在提供与质谱相关的机器学习方法实际应用方面的入门概述。此外,我们试图对机器学习与基于质谱的技术集成的最新进展进行最新综述,同时对该领域的未来方向提供批判性见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d58/11191731/a67a749fcaef/tg3c00060_0001.jpg

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